View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708_high_15 (Length: 355)
Name: NF7708_high_15
Description: NF7708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 17 - 344
Target Start/End: Complemental strand, 1006472 - 1006147
Alignment:
| Q |
17 |
cttccatgtatgcattgtatgcctccagaatatcatgagcacggttgatgaaatgccctacaataaagtcttcgaaattctgnnnnnnnnntaatcttaa |
116 |
Q |
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| T |
1006472 |
cttccatgtatgcattgtatgcctccagaatatcatgagcacggttgatgaaatgccctacaataaagtcttcgaaattctgaaaaaaaa-taatcttaa |
1006374 |
T |
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| Q |
117 |
aattaaacctcggaaaaggaatagccacaaatttaagttaccatgaacaaatatgcattttttctcttaaacaaacttgcaaaaccattatctgtttttc |
216 |
Q |
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| T |
1006373 |
aattaaacctcggaaaaggaatagccacaaatttaagttaccatgaacaaatatgcattttttctcttaaacaaacttgcaaaaccactatctgtttttc |
1006274 |
T |
|
| Q |
217 |
tattttgaactctgccattctcacactaagtgacattgacttatcatgagagtttcattattttgttgaattttggtttcattaataagcgtagatttat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1006273 |
tattttgaactctgccattctcacactaagtgacattgacttatcatgagagtttcattattttgttgaattttggtttcattaataagcgtagatttat |
1006174 |
T |
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| Q |
317 |
ttattgctcttctaacctggatattctt |
344 |
Q |
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| T |
1006173 |
ttattgctcttctaacct-gatattctt |
1006147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 52474634 - 52474553
Alignment:
| Q |
17 |
cttccatgtatgcattgtatgcctccagaatatcatgagcacggttgatgaaatgccctacaataaagtcttcgaaattctg |
98 |
Q |
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| T |
52474634 |
cttcaatgtatgcattgcctgccaccataatttcatgaacacggctgatgaaatgccccacaacaaaatctttgaaattctg |
52474553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 38792137 - 38792190
Alignment:
| Q |
45 |
aatatcatgagcacggttgatgaaatgccctacaataaagtcttcgaaattctg |
98 |
Q |
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| T |
38792137 |
aatatcatgagcacggctgacgaaatgctccacaacaaagtcctcgaaattctg |
38792190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 21123631 - 21123679
Alignment:
| Q |
257 |
ttatcatgagagtttcattattttgttgaattttggtttcattaataag |
305 |
Q |
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| T |
21123631 |
ttatcatgtcagttgcattattttgttgaattttggttgcactaataag |
21123679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 98
Target Start/End: Original strand, 5838290 - 5838371
Alignment:
| Q |
17 |
cttccatgtatgcattgtatgcctccagaatatcatgagcacggttgatgaaatgccctacaataaagtcttcgaaattctg |
98 |
Q |
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||||||||||||| ||| ||||| | |||||||||||||| ||| || ||||||||| || ||||| || || |||||||| |
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| T |
5838290 |
cttccatgtatgccttgcatgcccctagaatatcatgagctcggacgaggaaatgccccactataaaatcctcaaaattctg |
5838371 |
T |
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