View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708_high_27 (Length: 250)
Name: NF7708_high_27
Description: NF7708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 27986923 - 27987132
Alignment:
| Q |
1 |
ctcatctgatgtgtcattttcttagccgtcattatcacgtaaaagtttcttacatcatttttattaaagtcaattaagttcttaattta-ttttttaagg |
99 |
Q |
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| T |
27986923 |
ctcatctgatgtgtcattttcttagccgtcattatcacgtaaaagtttcttacatcatttttattaaagtcaattaagttcttaatttatttttttaagg |
27987022 |
T |
|
| Q |
100 |
gaattaagttctttagagtcgtgctaagcggtacccctatcccgacaaatgttcaagagatagaggtactggttaaagaagtcaaaagaaaaaaatttaa |
199 |
Q |
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| T |
27987023 |
gaattaagttctttagagtcatgctaagcggcatcccggtgctgacaaatgttcaagagacacaggtactagttaaagaagtcaaaagaaaaagttttaa |
27987122 |
T |
|
| Q |
200 |
gttaaaaata |
209 |
Q |
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|| ||||||| |
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| T |
27987123 |
gtaaaaaata |
27987132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 28044225 - 28044434
Alignment:
| Q |
1 |
ctcatctgatgtgtcattttcttagccgtcattatcacgtaaaagtttcttacatcatttttattaaagtcaattaagttcttaattta-ttttttaagg |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28044225 |
ctcatctgatgtgtcattttcttagccgtcattatcacgtaaaagtttcttacatcatttttattaaagtcaattaagttcttaatttatttttttaagg |
28044324 |
T |
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| Q |
100 |
gaattaagttctttagagtcgtgctaagcggtacccctatcccgacaaatgttcaagagatagaggtactggttaaagaagtcaaaagaaaaaaatttaa |
199 |
Q |
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|||||||||||||||||||| |||||||||| | ||| | | ||||||||||||||||| | ||||||| |||||||||||||||||||||| ||||| |
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| T |
28044325 |
gaattaagttctttagagtcatgctaagcggcatcccggtgctgacaaatgttcaagagacacaggtactagttaaagaagtcaaaagaaaaagttttaa |
28044424 |
T |
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| Q |
200 |
gttaaaaata |
209 |
Q |
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|| ||||||| |
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| T |
28044425 |
gtaaaaaata |
28044434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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