View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7708_high_29 (Length: 244)

Name: NF7708_high_29
Description: NF7708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7708_high_29
NF7708_high_29
[»] chr8 (8 HSPs)
chr8 (12-146)||(19373044-19373177)
chr8 (37-161)||(19343411-19343534)
chr8 (37-94)||(19447127-19447184)
chr8 (37-94)||(19533892-19533949)
chr8 (37-94)||(19408870-19408927)
chr8 (37-89)||(19402764-19402816)
chr8 (37-89)||(19455890-19455942)
chr8 (37-89)||(19525135-19525187)


Alignment Details
Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 19373044 - 19373177
Alignment:
Q  12 atatgataagatactgtannnnnnnctttctattttgaatatgctttattctagaaaagaacacgtctttcatttttgtaatacnnnnnnngagtagtaa 111  Q
    ||||||||||||||||||       |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       || ||||||    
T  19373044 atatgataagatactgtatttttttctttctattttgaatatgctttattctagaaaagaatacgtctttcatttttgtaatac-ttttttgaatagtaa 19373142  T
Q  112 agatagtaataaaaggttgaactatttttacttat 146  Q
    | ||||||||||||||||||| |||||||||||||    
T  19373143 aaatagtaataaaaggttgaattatttttacttat 19373177  T

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Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 37 - 161
Target Start/End: Original strand, 19343411 - 19343534
Alignment:
Q  37 ctttctattttgaatatgctttattctagaaaagaacacgtctttcatttttgtaatacnnnnnnngagtagtaaagatagtaataaaaggttgaactat 136  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||       || ||||||| ||||||||||||||||||| |||    
T  19343411 ctttctattttgaatatgctttattctagaaaagaatacgtctatcatttttgtaatac-ttttttgaatagtaaaaatagtaataaaaggttgaattat 19343509  T
Q  137 ttttacttattacgttaaccttttg 161  Q
    |||||||||||| ||||||| ||||    
T  19343510 ttttacttattatgttaaccatttg 19343534  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 19447127 - 19447184
Alignment:
Q  37 ctttctattttgaatatgctttattctagaaaagaacacgtctttcatttttgtaata 94  Q
    |||| ||||||||| |||||||  |||||||||||| |||||||||||||||| ||||    
T  19447127 ctttatattttgaaaatgcttttatctagaaaagaatacgtctttcatttttgcaata 19447184  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 19533949 - 19533892
Alignment:
Q  37 ctttctattttgaatatgctttattctagaaaagaacacgtctttcatttttgtaata 94  Q
    |||| ||||||||| |||||||  |||||||||||| |||||||||||||||| ||||    
T  19533949 ctttatattttgaaaatgcttttatctagaaaagaatacgtctttcatttttgcaata 19533892  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 19408870 - 19408927
Alignment:
Q  37 ctttctattttgaatatgctttattctagaaaagaacacgtctttcatttttgtaata 94  Q
    |||| |||||||||||||||||  |||||||||||| || | ||||||||||| ||||    
T  19408870 ctttatattttgaatatgcttttatctagaaaagaagacatgtttcatttttgcaata 19408927  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 19402764 - 19402816
Alignment:
Q  37 ctttctattttgaatatgctttattctagaaaagaacacgtctttcatttttg 89  Q
    |||| |||||||||||||||||  |||||||||||| || |||||| ||||||    
T  19402764 ctttatattttgaatatgcttttatctagaaaagaagacatctttcgtttttg 19402816  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 19455890 - 19455942
Alignment:
Q  37 ctttctattttgaatatgctttattctagaaaagaacacgtctttcatttttg 89  Q
    |||| |||||||||||||||||  |||||||||||| || | |||||||||||    
T  19455890 ctttatattttgaatatgcttttatctagaaaagaagacatgtttcatttttg 19455942  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 19525187 - 19525135
Alignment:
Q  37 ctttctattttgaatatgctttattctagaaaagaacacgtctttcatttttg 89  Q
    |||| |||||||||||||||||  |||||||||||| || | |||||||||||    
T  19525187 ctttatattttgaatatgcttttatctagaaaagaagacatgtttcatttttg 19525135  T

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