View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708_high_3 (Length: 527)
Name: NF7708_high_3
Description: NF7708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 260 - 511
Target Start/End: Original strand, 6137219 - 6137470
Alignment:
| Q |
260 |
tgatcaaggttatagtaataagacactatttgaaaagagtaagatgatgtgattgtgatattaagaggtcaaacacgtaagtattaccttaatttcttta |
359 |
Q |
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| T |
6137219 |
tgatcaaggttatagtaataagacaatatttgaaaagagtaagatgatgtgattgtgatattaagaggtcaaacacgtaagtattaccttaatttcttta |
6137318 |
T |
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| Q |
360 |
ctgcgagatgattctacatcaaaacctcctccagtataatcctccaccttctcaaattgttcttgtttaaaggatgaagtttcagtttcctctccagact |
459 |
Q |
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| T |
6137319 |
ctgcgagacgattctacatcagaacctcctccagtataatcctccaccttctcaaattgttcttgtttaaaggatgaagtttcagtttcctctccagact |
6137418 |
T |
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| Q |
460 |
tcgtagaactctcatgaacaatcttaagtttcatcatttctttggaattatc |
511 |
Q |
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| T |
6137419 |
tcgtagaactctcatgaacaatcttaagtttcatcatttctttggaattatc |
6137470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 6136960 - 6137178
Alignment:
| Q |
1 |
cgctcattaaccaattgagtcccaaaagttggttttaatgttttgatattagtatatgtaaaatttgttcatgttggttttaattcttgtaatgtatgaa |
100 |
Q |
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| T |
6136960 |
cgctccttaaccaattgagtcccaaaagttggttttaatgttttgatattagtatatgtaaaatttgttcatgttggttttaattcttgtaatgtatgaa |
6137059 |
T |
|
| Q |
101 |
ctatattacttttaggactaaacttagataaagcgctatccatattgttctaattattcctctcaagaagacattttttcacaccctttcaaaattgttc |
200 |
Q |
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| T |
6137060 |
ctatattaattttaggactaaacttagataaagcgctatccatattgttctaattattcctctcaagaagacattttttcacaccctttcagaattgttc |
6137159 |
T |
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| Q |
201 |
ctcacataaaggttaactc |
219 |
Q |
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| T |
6137160 |
ctcacataaaggttaactc |
6137178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 372 - 511
Target Start/End: Original strand, 6175441 - 6175580
Alignment:
| Q |
372 |
tctacatcaaaacctcctccagtataatcctccaccttctcaaattgttcttgtttaaaggatgaagtttcagtttcctctccagacttcgtagaactct |
471 |
Q |
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||||||||| || ||||||||||| |||||| | ||||||| |||||||| ||||| ||| |||||||||||||| ||||||||||||| |||||||| |
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| T |
6175441 |
tctacatcagaatctcctccagtagaatccttctccttctcgaattgttcatgtttgttggaagaagtttcagtttcatctccagacttcgcagaactct |
6175540 |
T |
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| Q |
472 |
catgaacaatcttaagtttcatcatttctttggaattatc |
511 |
Q |
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| T |
6175541 |
catgaacaatcttaaatttcataatttctttggaattatc |
6175580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 40 - 117
Target Start/End: Original strand, 6174926 - 6175003
Alignment:
| Q |
40 |
gttttgatattagtatatgtaaaatttgttcatgttggttttaattcttgtaatgtatgaactatattacttttagga |
117 |
Q |
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| T |
6174926 |
gttttgaatttagtatatgtaatatttgttcatgttggtttcaatacttgtaatatatgaacagtattaattttagga |
6175003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 343 - 511
Target Start/End: Original strand, 6185279 - 6185444
Alignment:
| Q |
343 |
ttaccttaatttctttactgcgagatgattctacatcaaaacctcctccagtataatcctccaccttctcaaattgttcttgtttaaaggatgaagtttc |
442 |
Q |
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||||||||||| ||||| || ||| |||||||||||| | | |||| ||| | || ||| |||||||||||||||||||||| || |||||||| |
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| T |
6185279 |
ttaccttaattgctttattgaaagacgattctacatcagagcatccttcagaagaa---tcccccttctcaaattgttcttgtttgtgtgaagaagtttc |
6185375 |
T |
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| Q |
443 |
agtttcctctccagacttcgtagaactctcatgaacaatcttaagtttcatcatttctttggaattatc |
511 |
Q |
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| T |
6185376 |
ggtttcctctccagacattgtacaattctcataaagaatcttagatttcaccatttgttttgaattatc |
6185444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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