View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7708_high_33 (Length: 229)

Name: NF7708_high_33
Description: NF7708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7708_high_33
NF7708_high_33
[»] chr4 (9 HSPs)
chr4 (50-213)||(2390962-2391125)
chr4 (50-207)||(2381334-2381491)
chr4 (50-187)||(2380079-2380216)
chr4 (95-152)||(2367678-2367735)
chr4 (106-149)||(1547469-1547512)
chr4 (109-152)||(2373256-2373299)
chr4 (85-160)||(2460589-2460664)
chr4 (106-153)||(12126879-12126926)
chr4 (104-149)||(6007668-6007713)
[»] chr1 (3 HSPs)
chr1 (85-204)||(15837955-15838074)
chr1 (88-135)||(9581951-9581998)
chr1 (88-134)||(9587510-9587556)
[»] chr3 (1 HSPs)
chr3 (105-149)||(513446-513490)
[»] chr8 (2 HSPs)
chr8 (104-149)||(32152209-32152254)
chr8 (85-150)||(39516859-39516924)
[»] chr6 (1 HSPs)
chr6 (94-149)||(10578802-10578857)
[»] chr5 (2 HSPs)
chr5 (103-149)||(32268773-32268819)
chr5 (104-149)||(41900267-41900312)


Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 50 - 213
Target Start/End: Original strand, 2390962 - 2391125
Alignment:
Q  50 aatacatcatcaaattccttgatggagatcactatactttcaagtctctttctatcgtctccaaacaattactctccatcaccaacaatctccgattctc 149  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2390962 aatacatcatcaaattccttgatgaagaccactatactttcaagtctctttctatcgtctcgaaacaattactctccatcaccaacaatctccgattctc 2391061  T
Q  150 catcaaaatcacccaacaaaccatccctttcattcctcaaatcttccaacggttctctgatgtc 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2391062 catcaaaatcacccaacaaaccatccctttcattcctcaaatcttccaacggttctctaatgtc 2391125  T

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Target: chr4; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 50 - 207
Target Start/End: Original strand, 2381334 - 2381491
Alignment:
Q  50 aatacatcatcaaattccttgatggagatcactatactttcaagtctctttctatcgtctccaaacaattactctccatcaccaacaatctccgattctc 149  Q
    |||||||||||||||||||  ||||||| ||||  ||||||||||||||||| |||||||||||||| |||||||| |||||||||| ||||||||||||    
T  2381334 aatacatcatcaaattcctcaatggagaccactgcactttcaagtctctttccatcgtctccaaacagttactctcgatcaccaacagtctccgattctc 2381433  T
Q  150 catcaaaatcacccaacaaaccatccctttcattcctcaaatcttccaacggttctct 207  Q
    | |||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||    
T  2381434 cgtcaaaatcaccctacaaaccatccctttcattcctcaactcttccaacgcttctct 2381491  T

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Target: chr4; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 50 - 187
Target Start/End: Original strand, 2380079 - 2380216
Alignment:
Q  50 aatacatcatcaaattccttgatggagatcactatactttcaagtctctttctatcgtctccaaacaattactctccatcaccaacaatctccgattctc 149  Q
    |||||||||||||||||||||||||||| |||| |||| ||||||||||||| |||||||||||||| |||||||| |||||| ||| | |||||||| |    
T  2380079 aatacatcatcaaattccttgatggagaccactgtactgtcaagtctctttccatcgtctccaaacagttactctcgatcacctacagtttccgattcac 2380178  T
Q  150 catcaaaatcacccaacaaaccatccctttcattcctc 187  Q
    | |||||||||||||||||||||||||||| |||||||    
T  2380179 cctcaaaatcacccaacaaaccatcccttttattcctc 2380216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 95 - 152
Target Start/End: Original strand, 2367678 - 2367735
Alignment:
Q  95 ctctttctatcgtctccaaacaattactctccatcaccaacaatctccgattctccat 152  Q
    ||||||| ||||||||||||||||| |||||||||||||||  |||||||||||||||    
T  2367678 ctctttccatcgtctccaaacaatttctctccatcaccaaccgtctccgattctccat 2367735  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 149
Target Start/End: Original strand, 1547469 - 1547512
Alignment:
Q  106 gtctccaaacaattactctccatcaccaacaatctccgattctc 149  Q
    |||||||||||||| |||||||||||||||  ||||||||||||    
T  1547469 gtctccaaacaattcctctccatcaccaaccgtctccgattctc 1547512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 152
Target Start/End: Original strand, 2373256 - 2373299
Alignment:
Q  109 tccaaacaattactctccatcaccaacaatctccgattctccat 152  Q
    ||||||||||| ||||||||||||||  ||||||||||||||||    
T  2373256 tccaaacaatttctctccatcaccaatcatctccgattctccat 2373299  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 2460664 - 2460589
Alignment:
Q  85 actttcaagtctctttctatcgtctccaaacaattactctccatcaccaacaatctccgattctccatcaaaatca 160  Q
    |||||||| ||||| || || ||||||||||| || ||||||||||||||   ||||||||||||  |||||||||    
T  2460664 actttcaaatctctctccatggtctccaaacagttcctctccatcaccaatcgtctccgattctctctcaaaatca 2460589  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 153
Target Start/End: Complemental strand, 12126926 - 12126879
Alignment:
Q  106 gtctccaaacaattactctccatcaccaacaatctccgattctccatc 153  Q
    |||||||||||||| |||||||||||||||  ||||| ||||||||||    
T  12126926 gtctccaaacaatttctctccatcaccaaccgtctcctattctccatc 12126879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 6007713 - 6007668
Alignment:
Q  104 tcgtctccaaacaattactctccatcaccaacaatctccgattctc 149  Q
    ||||||| ||||| || |||||||||||||||| ||||||||||||    
T  6007713 tcgtctcgaaacagttcctctccatcaccaacagtctccgattctc 6007668  T

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Target: chr1 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 85 - 204
Target Start/End: Original strand, 15837955 - 15838074
Alignment:
Q  85 actttcaagtctctttctatcgtctccaaacaattactctccatcaccaacaatctccgattctccatcaaaatcacccaacaaaccatccctttcattc 184  Q
    ||||||||||| || || || ||||||||||| || |||||||||||||||  ||||||||||||| |||||||||   | ||||| |||||||||||||    
T  15837955 actttcaagtccctctcgatggtctccaaacagtttctctccatcaccaaccgtctccgattctccctcaaaatcatagatcaaacaatccctttcattc 15838054  T
Q  185 ctcaaatcttccaacggttc 204  Q
    || |  |||||||| |||||    
T  15838055 ctaacctcttccaaaggttc 15838074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 135
Target Start/End: Complemental strand, 9581998 - 9581951
Alignment:
Q  88 ttcaagtctctttctatcgtctccaaacaattactctccatcaccaac 135  Q
    ||||||||||||||| ||||||||||||| || ||||| |||||||||    
T  9581998 ttcaagtctctttctgtcgtctccaaacagtttctctctatcaccaac 9581951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 9587556 - 9587510
Alignment:
Q  88 ttcaagtctctttctatcgtctccaaacaattactctccatcaccaa 134  Q
    ||||||||||||||| ||||||||||||| || |||||| |||||||    
T  9587556 ttcaagtctctttctgtcgtctccaaacagtttctctccgtcaccaa 9587510  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 513446 - 513490
Alignment:
Q  105 cgtctccaaacaattactctccatcaccaacaatctccgattctc 149  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||    
T  513446 cgtctcaaaacagttactctccatcaccaacaatctccgattctc 513490  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 149
Target Start/End: Complemental strand, 32152254 - 32152209
Alignment:
Q  104 tcgtctccaaacaattactctccatcaccaacaatctccgattctc 149  Q
    ||||||||||||| || |||||||||||||||| ||||||||||||    
T  32152254 tcgtctccaaacagttcctctccatcaccaacagtctccgattctc 32152209  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 39516924 - 39516859
Alignment:
Q  85 actttcaagtctctttctatcgtctccaaacaattactctccatcaccaacaatctccgattctcc 150  Q
    |||||||||||||| || |||||||||| |||||| ||| |||||||||||  |||| ||||||||    
T  39516924 actttcaagtctctctccatcgtctccagacaatttctcgccatcaccaaccgtctcagattctcc 39516859  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 149
Target Start/End: Original strand, 10578802 - 10578857
Alignment:
Q  94 tctctttctatcgtctccaaacaattactctccatcaccaacaatctccgattctc 149  Q
    ||||| ||| |||||||||||||||| |||||||| ||||||| ||||| ||||||    
T  10578802 tctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctc 10578857  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 32268819 - 32268773
Alignment:
Q  103 atcgtctccaaacaattactctccatcaccaacaatctccgattctc 149  Q
    |||||||||||||| ||||||||||||||||||  ||| ||||||||    
T  32268819 atcgtctccaaacagttactctccatcaccaaccgtcttcgattctc 32268773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 149
Target Start/End: Original strand, 41900267 - 41900312
Alignment:
Q  104 tcgtctccaaacaattactctccatcaccaacaatctccgattctc 149  Q
    ||||||||||||| || |||||||||||||||| ||| ||||||||    
T  41900267 tcgtctccaaacagtttctctccatcaccaacactcttcgattctc 41900312  T

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