View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708_high_35 (Length: 224)
Name: NF7708_high_35
Description: NF7708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 207
Target Start/End: Original strand, 8766348 - 8766542
Alignment:
| Q |
13 |
atgaacatgaacacaacaggtacaccaaatccaaccatccaaccaaaaatttcttgaatatatgccaaaacggtcattccagttagaactgcagctgctg |
112 |
Q |
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| T |
8766348 |
atgaacatgaacacaacaggtacaccaaatccaaccatccaaccaaaaatttcttgaatatatgccaaaacggtcattccagttaggactgcagctgctg |
8766447 |
T |
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| Q |
113 |
ttaaagcataggtccaattaaagtagccctctatgattccggcatctttttccttgtttagttgatcaatgccaaaggctaaagaggaagctctt |
207 |
Q |
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| T |
8766448 |
ttaaagcataggtccaattaaagtagccctctatgattcctgcatctttttccttgtttagttgatcaatgccaaaggctaaagaggaagctctt |
8766542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 207
Target Start/End: Original strand, 8748778 - 8748972
Alignment:
| Q |
13 |
atgaacatgaacacaacaggtacaccaaatccaaccatccaaccaaaaatttcttgaatatatgccaaaacggtcattccagttagaactgcagctgctg |
112 |
Q |
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| T |
8748778 |
atgaacatgaacacaacaggtaaaccaaatccaacaatccaaccaaaattttcttgaatatatgccaaaatggtcgttccaattaaaactgcagctgttg |
8748877 |
T |
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| Q |
113 |
ttaaagcataggtccaattaaagtagccctctatgattccggcatctttttccttgtttagttgatcaatgccaaaggctaaagaggaagctctt |
207 |
Q |
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| T |
8748878 |
ctaaagcataggtccaattaaagtagccctctatgattcctgcatctttttccttgtctagttggtcaatgccaaagggtaaggaagaagctctt |
8748972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 13 - 207
Target Start/End: Original strand, 8756329 - 8756523
Alignment:
| Q |
13 |
atgaacatgaacacaacaggtacaccaaatccaaccatccaaccaaaaatttcttgaatatatgccaaaacggtcattccagttagaactgcagctgctg |
112 |
Q |
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||||||||||| |||||||| ||||||||||||| |||||||||||| |||||||||| || ||||| | |||| ||||| ||| |||||||||||||| |
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| T |
8756329 |
atgaacatgaagacaacagggacaccaaatccaataatccaaccaaaattttcttgaatgtacgccaagatggtcgttccaattaaaactgcagctgctg |
8756428 |
T |
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| Q |
113 |
ttaaagcataggtccaattaaagtagccctctatgattccggcatctttttccttgtttagttgatcaatgccaaaggctaaagaggaagctctt |
207 |
Q |
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| T |
8756429 |
ttaaagcatagctccaattaaagtagccctctatgattcctgcatctttttccttgtctagttggtcaatgccaaaggctaaggaagaggctctt |
8756523 |
T |
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