View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708_high_5 (Length: 496)
Name: NF7708_high_5
Description: NF7708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 483
Target Start/End: Original strand, 24291851 - 24292334
Alignment:
| Q |
1 |
tcaggcagatgacagttttttcttttctatcgccattcagttgcttagtgagcttcttcactgtgaagtcatccttatcattcccgtgatttaattattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24291851 |
tcaggcagatgacagttttttcttttctatcgccattcagttgcttagtgagcttcttcactgtgaagtcatccttatcattcccgtgatttaattattc |
24291950 |
T |
|
| Q |
101 |
catcttctttcttatgaatatgcaggttaagtcaagaatgatgggagattctagttacaaaagcacgattgattgtttcgtcaaaacattaaaaaatgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24291951 |
catcttctttcttatgaatatgcaggttaagtcaagaatgatgggagattctagttacaaaagcacgattgattgtttcgtcaaaacattaaaaaatgat |
24292050 |
T |
|
| Q |
201 |
gtatggttttttctcctatcattactttcctctcaccctgtttttctttaattttaatcaccaacagtatgcgaataaaatacttcgcagaatttgatca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24292051 |
gtatggttttttctcctatcattactttcctctcaccctgtttttctttaattttaatcaccaacagtatgcgaataaaatacttcgcagaatttgatca |
24292150 |
T |
|
| Q |
301 |
catcaagttttaagcttagttagtgtctgtgagctaaacagacttccttgtgacttttcggtttttatgatatctttatttcttatgttgcatgatatgc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24292151 |
catcaagttttaagcttagttagtgtctgtgagctaaacagacctccttgtgacttttcggtttttatgatatctttatttcttatgttgcatgatatgc |
24292250 |
T |
|
| Q |
401 |
c-nnnnnnnnnctctgcatgaatttctttgttgggaaatgcagtaggaatagtccaagaatttttcattattattggatgatgt |
483 |
Q |
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| T |
24292251 |
cttttttttttctctgcatgaatttctttgttgggaaatgcagtaggaatagtccaagaatttttcattattattggatgatgt |
24292334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 115 - 205
Target Start/End: Complemental strand, 5772766 - 5772676
Alignment:
| Q |
115 |
tgaatatgcaggttaagtcaagaatgatgggagattctagttacaaaagcacgattgattgtttcgtcaaaacattaaaaaatgatgtatg |
205 |
Q |
| |
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||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||| || |||||||| ||||| ||||||||||| |
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| T |
5772766 |
tgaatatgcaggtcaagtcgagaatgatgggagattctagttacaaaagcacccttgattgctttgtcaaaaccttaaagaatgatgtatg |
5772676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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