View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7708_high_9 (Length: 422)
Name: NF7708_high_9
Description: NF7708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708_high_9 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 1184285 - 1184706
Alignment:
| Q |
1 |
tcacaagtaaatctgttttgtttgttttgtggaaaacgaggtcaccaactcaatgattgctcggcagttgcagaaagcgagctagaagatcttcaggaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1184285 |
tcacaagtaaatctgttttgtttgttttgtggaaaaagaggtcaccaactcagtgattgctcagcagttgcagaaagtgagctagaagatcttcaggaga |
1184384 |
T |
|
| Q |
101 |
atgtaaattcatatgaaggtccggaaaattttcctttgatgtgcattaaatgttttcagctcaaccactgggcagtttcatgttccagttcaatctcaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1184385 |
atgtaaattcatatgaaggtccggaaaattttcctttgatgtgcattaaatgttttcagctcaaccactgggcagtttcatgttccagttcaatctcaaa |
1184484 |
T |
|
| Q |
201 |
aaggaaacatgaatcgaaagtcaaaacctttctccatgaaaggagtgcaagaccggcgcagattgacgaggcagacaggattttatctggcggtgctatc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1184485 |
aaggaaacatgaatcgaaagtcaaaacctttctccatgaagggagtgcaagaccggcgcagattgacgaggcagacaggattttatctggcggtgctatc |
1184584 |
T |
|
| Q |
301 |
catgatggaatccatcccaaaacagatcagaatattaatttaaagcggaaatccaatggcgttataaacgccaagatagaatgcaatgcatcatgcaaga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1184585 |
catgatggaatccatcccaaaacagatcagaatattaatttaaagcggaaatccaatgacgttataaacgccaagatagaatgcaatgcatcatgcaaga |
1184684 |
T |
|
| Q |
401 |
aatattgtggttctagttcaaa |
422 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
1184685 |
aatattgtggttctagttcaaa |
1184706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 16993513 - 16993092
Alignment:
| Q |
1 |
tcacaagtaaatctgttttgtttgttttgtggaaaacgaggtcaccaactcaatgattgctcggcagttgcagaaagcgagctagaagatcttcaggaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
16993513 |
tcacaagtaaatctgttttgtttgttttgtggaaaaagaggtcaccaactcagtgattgctcagcagttgcagaaagtgagctagaagatcttcaggaga |
16993414 |
T |
|
| Q |
101 |
atgtaaattcatatgaaggtccggaaaattttcctttgatgtgcattaaatgttttcagctcaaccactgggcagtttcatgttccagttcaatctcaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16993413 |
atgtaaattcatatgaaggtccggaaaattttcctttgatgtgcattaaatgttttcagctcaaccactgggcagtttcatgttccagttcaatctcaaa |
16993314 |
T |
|
| Q |
201 |
aaggaaacatgaatcgaaagtcaaaacctttctccatgaaaggagtgcaagaccggcgcagattgacgaggcagacaggattttatctggcggtgctatc |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
16993313 |
aaggaaacatgaatcgaaagtcaaaacttttctccatgaagggagtgcaagaccggcggagattgacgaggcagacatgattttatctggcggtgctatc |
16993214 |
T |
|
| Q |
301 |
catgatggaatccatcccaaaacagatcagaatattaatttaaagcggaaatccaatggcgttataaacgccaagatagaatgcaatgcatcatgcaaga |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16993213 |
catgatggaatccatcccaaaacagatcagaatatgaatttaaagcggaaatccaatgacgttataaacgccaagatagaatgcaatgcatcatgcaaga |
16993114 |
T |
|
| Q |
401 |
aatattgtggttctagttcaaa |
422 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
16993113 |
aatattgtggttctagttcaaa |
16993092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University