View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7708_low_10 (Length: 475)

Name: NF7708_low_10
Description: NF7708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7708_low_10
NF7708_low_10
[»] chr5 (3 HSPs)
chr5 (19-475)||(42516456-42516912)
chr5 (19-475)||(42523106-42523564)
chr5 (19-372)||(42507037-42507391)


Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 19 - 475
Target Start/End: Complemental strand, 42516912 - 42516456
Alignment:
Q  19 tcataagcatcaactcgtgtatttggaaaattgtaatctgcaaataaacaaatattaacttagttaat---attaataaaagattctacttctactcgag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||| ||    
T  42516912 tcataagcatcaactcgtgtatttggaaaattgtaatctgcaaataaacaaatattaacttagttaatgatattaataaaagattctacttctactctag 42516813  T
Q  116 ttagtttctatttattatatttatatgaatgttctactctataaatcaaggttacataaaatagtgacaaaaggataaaagaaacaaaccagaaatctcc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  42516812 ttagtttctatttattatatttatatgaatgttctactctataaatcaaggttacataaaatagtgacaaaaggataaaagaaacaaaccagaaatctgc 42516713  T
Q  216 cttatacgatgatgaatggaggaagtaatacaaagtgtaaggagaaagagagtgataaagccaaggatggattttgacgccataggagagaattgagagt 315  Q
    ||||| ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42516712 cttatgcgatga---atggaggaagtaatacaaagtgtaaggagaaagagagtgataaagccaaggatggattttgacgccataggagagaattgagagt 42516616  T
Q  316 aagtaaggtttgtgtgatatttgtggagaaaaagaataaagcgatgcacaaatatatcgattttttattgaagttttgaagaatgtgaaatattagggct 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||| |||||    
T  42516615 aagtaaggtttgtgtgatatttgtggagaaaaagaataaagcgatgcacaaatatatcgaattttgattgaagttttgaagaatgtgatatatttgggct 42516516  T
Q  416 ggcacaacttattatatatatcctaacttttggttaaagtatatcatcaatatacataat 475  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42516515 ggcacaacttattatatatatcctaacttttggttaaagtatatcatcaatatacataat 42516456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 19 - 475
Target Start/End: Complemental strand, 42523564 - 42523106
Alignment:
Q  19 tcataagcatcaactcgtgtatttggaaaattgtaatctgcaaataaacaaatattaacttagttaata---ttaataaaagattctacttctactcgag 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||| ||    
T  42523564 tcataagcatcaactcgtgtatttggaaaattgtaatctgcaaataaacaaatattaacttagttaataatattaataaaagattctacttctactctag 42523465  T
Q  116 ttagtttctatttattatatttatatgaatgttctactctataaatcaaggttacataaaatagtgacaaaaggataaaagaaacaaaccagaaatctcc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  42523464 ttagtttctatttattatatttatatgaatgttctactctataaatcaaggttacataaaatagtgacaaaaggataaaagaaacaaaccagaagtctgc 42523365  T
Q  216 cttatacgatgatgaatggaggaagtaatacaaagtgtaaggagaaagagagtgataaagccaaggatggattttgacgccataggagagaattgagagt 315  Q
    ||||| ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42523364 cttatgcgatga---atggaggaagtaatacaaagtgtaaggagaaagagagtgataaagccaaggatggattttgacgccataggagagaattgagagt 42523268  T
Q  316 aagtaaggtttgtgtgatatttgtggagaaaaagaataaagcgatgcacaaatatatcgattttttattgaagttttgaagaatgtgaaatattagggct 415  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  42523267 aagtaaggtttgtgcgatatttgtggagaaaaagaataaagcgatgcacaaatatatcgatttttgattgaagttttgaagaatgtgaaatattagggct 42523168  T
Q  416 ggcacaacttattatat--atatcctaacttttggttaaagtatatcatcaatatacataat 475  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  42523167 ggcacaacttattatatatatatcctaacttttggttaaagtatatcatcaatatacataat 42523106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 19 - 372
Target Start/End: Complemental strand, 42507391 - 42507037
Alignment:
Q  19 tcataagcatcaactcgtgtatttggaaaattgtaatctgcaaataaacaaatattaacttagttaat---attaataaaagattctacttctactcgag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||| ||    
T  42507391 tcataagcatcaactcgtgtatttggaaaattgtaatctgcaaataaacaaatattaacttagttaatgatattaataaaagattctacttctactctag 42507292  T
Q  116 ttagtttctatttattatatttatatgaatgttctactctataaatcaaggttacataaaatagtgacaaaaggataaaagaaacaaaccagaaatctcc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  42507291 ttagtttctatttattatatttatatgaatgttctactctataaatcaaggttacataaaatagtgacaaaaggataaaagaaacaaaccagaagtctgc 42507192  T
Q  216 cttatacgatgatgaatggaggaagtaatacaaagtgtaaggagaaagagagtgataaagccaaggatggattttgacgccataggagag--aattgaga 313  Q
    ||||| |   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||| |    
T  42507191 cttatgc---gatgaatggaggaagtaatacaaagtgtaaggagaaagagagtgataaagccaaggatggattttgacgccatacgagagaaaattgaaa 42507095  T
Q  314 gtaagtaaggtttgtgtgatatttgtggagaaaaagaataaagcgatgcacaaatatat 372  Q
    |||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  42507094 gtaagt-aggtttttgtgatatttgtggagaaaaagaataatgcgatgcacaaatatat 42507037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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