View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708_low_11 (Length: 472)
Name: NF7708_low_11
Description: NF7708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 20 - 460
Target Start/End: Original strand, 33768083 - 33768523
Alignment:
| Q |
20 |
aaaaacacaacccaattcatctcagtccccgccaaataaaacgccctcggctgcttaaccaacatatgataagtatgcttagtcaaactaaactcctcct |
119 |
Q |
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| T |
33768083 |
aaaaacacaacccaattcatctcagtccccgccaaataaaacgccctcggctgcttaaccaacatatgataagtatgcttagtcaaactaaactcctcct |
33768182 |
T |
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| Q |
120 |
taaactcaacaagatgatgaattgaagctctcttctccaatgtcaaactcaaaaactcatgaatcaatccaaccctatacttctcagcttccaatgtcca |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33768183 |
taaactcaacaagatgatgaattgaagctctcttctccaatgtcaaactcaaaaactcatgaatcaatccaaccctatacttctcagcttccaatgtcca |
33768282 |
T |
|
| Q |
220 |
cacatcaaacttcgccccatcagaataaggcgaaaccaacggtaacgcatttaacaaattcatcttcctctcatcctcaattcccaattccaaatccttc |
319 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33768283 |
cacatcaaacttcgccccatccgaataaggcgaaaccaacggtaacgcatttaacaaattcatcttcctctcatcctcaattcccaattccaaatccttc |
33768382 |
T |
|
| Q |
320 |
ccatgcttcacaggaaaagtaaatttcctcttagcatcatcctcattcaccatgaactccttttcaatcgcgctaaccgccaaaagtgggtcccaattaa |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33768383 |
ccatgcttcacaggaaaagtaaatttcctcttagcatcatcctcattcaccatgaactccttttcaatcgcgctaaccgccaaaagcgggtcccaattaa |
33768482 |
T |
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| Q |
420 |
ccaattcaagaactctcactttcttcccatcatctttgttc |
460 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
33768483 |
ccaattcaagaactctcactttcttcccatcatctttgttc |
33768523 |
T |
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