View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708_low_12 (Length: 472)
Name: NF7708_low_12
Description: NF7708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 19 - 465
Target Start/End: Complemental strand, 38851019 - 38850573
Alignment:
| Q |
19 |
caacgtagatggtccatattagtcctttctagtaaagttaacatagatactattttgactaatattttagaattttgggatgtatttgccaattagcaaa |
118 |
Q |
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| T |
38851019 |
caacgtagatggtccatattagtcctttttagtaaagttaacatagatactattttgactaatattttagaattttgggatgtatttgccaattagcaaa |
38850920 |
T |
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| Q |
119 |
aataagatatcattttgattaatacttacaatttcaaggatcagtttgtgaactcactattcaaagaaactatctttgtgatttgtttttcaaatgtact |
218 |
Q |
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| T |
38850919 |
aataagatatcattttgattaatacttacaatttcaaggatcagtttgtgaactcactattcaaagaaactatctttgtgatttgtttttcaaatgtact |
38850820 |
T |
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| Q |
219 |
atgaataaggatcatagaaactaattggattttatggtgcagggagcattgtctactgctgcagtattttgtttacaatcatgggcaataactatcaagg |
318 |
Q |
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| T |
38850819 |
atgaataaggatcatggaaactaattggattttatggtgcagggagcattgtctactgctgcagtattttgtttacaatcatgggcaatgactatcaagg |
38850720 |
T |
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| Q |
319 |
gacctacttacccttcaatgttcaatccacttgcacttgtttttgttgcctttgcagaagctatgatacttggtgaaccactaacggttggaacgtatga |
418 |
Q |
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| T |
38850719 |
gacctacttacccttcaatgttcaatccacttgcacttgtttttgttgcctttgcagaagctatgatacttggtgaaccactaacggttggaacgtatga |
38850620 |
T |
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| Q |
419 |
atacttttccttcttaccattaattataacaattttcatttcttctc |
465 |
Q |
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| T |
38850619 |
atacttttccttcttaccgttaattataacaattttcatttcttctc |
38850573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 259 - 459
Target Start/End: Complemental strand, 29222849 - 29222653
Alignment:
| Q |
259 |
agggagcattgtctactgctgcagtattttgtttacaatcatgggcaataactatcaagggacctacttacccttcaatgttcaatccacttgcacttgt |
358 |
Q |
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| T |
29222849 |
agggagcattggctacagctgctacattttgtttactaacatgggcaattaaaattaagggacctactttccctccaatgttcaatccattggctcttgt |
29222750 |
T |
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| Q |
359 |
ttttgttgcctttgcagaagctatgatacttggtgaaccactaacggttggaacgtatgaatacttttccttcttaccattaattataacaattttcatt |
458 |
Q |
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| T |
29222749 |
tttcgttgccatatctgacactatcatacttggtgaaccactcaaagttggaacgtatgaatatttttccctctt----cttattataacaattttcatt |
29222654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 259 - 422
Target Start/End: Original strand, 29148025 - 29148188
Alignment:
| Q |
259 |
agggagcattgtctactgctgcagtattttgtttacaatcatgggcaataactatcaagggacctacttacccttcaatgttcaatccacttgcacttgt |
358 |
Q |
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| T |
29148025 |
agggagcattggctactgctgctacattttgtttactatcatgggcaattaccattaaaggacctacttaccctccgatgtttaatccgttggctcttat |
29148124 |
T |
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| Q |
359 |
ttttgttgcctttgcagaagctatgatacttggtgaaccactaacggttggaacgtatgaatac |
422 |
Q |
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| T |
29148125 |
tttcgttgccatatcagaggctatcatacttggcgaaccgttaagggttggaacgtatgaatac |
29148188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 259 - 431
Target Start/End: Complemental strand, 5302869 - 5302697
Alignment:
| Q |
259 |
agggagcattgtctactgctgcagtattttgtttacaatcatgggcaataactatcaagggacctacttacccttcaatgttcaatccacttgcacttgt |
358 |
Q |
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| T |
5302869 |
agggagcattggctactgctgcaacattttgtttactatcatgggcgatcacaatcaagggacctagttatcctccaatgttcaatccactttgtctagt |
5302770 |
T |
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| Q |
359 |
ttttgttgcctttgcagaagctatgatacttggtgaaccactaacggttggaacgtatgaatacttttccttc |
431 |
Q |
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| T |
5302769 |
ttttgttgccatttcagaagctttcatacttggtgaaccactcaaagttggaacgtaagaatacttttccttc |
5302697 |
T |
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