View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7708_low_13 (Length: 469)
Name: NF7708_low_13
Description: NF7708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708_low_13 |
 | |
|
| [»] scaffold0112 (1 HSPs) |
| | |
|
| [»] scaffold0093 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 12 - 455
Target Start/End: Complemental strand, 15617162 - 15616720
Alignment:
| Q |
12 |
tgttcgacgaaaagattcggctgtattgaaactaaacacttgttgaatcacttcctcattccagccattcgacgaggaattcatcaaactattcatatga |
111 |
Q |
| |
|
||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
15617162 |
tgttcgaagaaaaaattcagctgtattgaaactaaacacttgttgaatcacttcctcattctagccattcgacgaggaattcatcagactattcatatga |
15617063 |
T |
|
| Q |
112 |
aaatccctcacaaagtttacccccacaatatttccatctatgtgatcctcattcactaaccatggttcatcaagtatagatatagagtgatccgtactga |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15617062 |
aaatccctcacaaagtttacccccacaatatttccatctatgtcatcctcattcactaaccatggttcatcaagtatagatatagagtgacccgtactga |
15616963 |
T |
|
| Q |
212 |
tacaccaatgtgccctgttgtgcaccatgaagcaaaccttcaaaatacttctcattacatagctaggtttgtgacctagattcaacgtcaagtaactacg |
311 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
15616962 |
tacaccaatgcgccctgttgtgcactatgaagcaaaccttcaaaatacttctcattacatagctaggtttacgacctagattcaacgtcaagtaactacg |
15616863 |
T |
|
| Q |
312 |
ggaaggaaagtaccgcgcattgtaaatacgagagacaacataatcaagttatctgaaatttcaaacctttgtttccctaacacagccatacacaaatcaa |
411 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||| ||||||| ||||||||||||||||| |
|
|
| T |
15616862 |
ggaaggaaagtaccacgcattgtaaatacgagagataacataatcaagttatctgaaatttcaaatc-ttgttttcctaacatagccatacacaaatcaa |
15616764 |
T |
|
| Q |
412 |
caggtgttttagcgttttaaaatatatatgtgagttgctatttt |
455 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
15616763 |
caggtgttttaacgttttaaaatatatatgtgagttgctatttt |
15616720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 201
Target Start/End: Complemental strand, 16042920 - 16042836
Alignment:
| Q |
111 |
aaaatccctcacaaagtttacccccacaatatttccatctatgtgatcctcattcactaaccatggttcatcaagtatagatatagagtga |
201 |
Q |
| |
|
||||||||||||||||||| | |||| |||||||||||| ||||||||| |||| | ||||||||| |||||| |||||||||||| |
|
|
| T |
16042920 |
aaaatccctcacaaagttttcacccataatatttccatccatgtgatccccattta------atggttcataaagtattgatatagagtga |
16042836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 42 - 399
Target Start/End: Original strand, 43219220 - 43219578
Alignment:
| Q |
42 |
actaaacacttgttgaatcacttcctcattccagccattcgacgaggaattcatcaaactattcatatgaaaatccctcacaaagtttacccccacaata |
141 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||| || |||| |||| || ||||| |||| || || ||||||||||||||||||| | |||| |||| |
|
|
| T |
43219220 |
actaaacacttgttgaataacttcctggttccaacccttcgtcgagacatgcatcagactactcccataaaaatccctcacaaagtttgcacccataata |
43219319 |
T |
|
| Q |
142 |
tttccatctatgtgatcctcattcactaaccatggttcatcaagtatagatatagagtgatccgtactgatacaccaatgtgccctgttgtgcaccatga |
241 |
Q |
| |
|
|||||||| ||| | ||| |||||| ||||| |||||||||||||| |||||||||||| |||||| ||||||||| | |||| | |||| |||| |
|
|
| T |
43219320 |
tttccatcaatgcggtccccattcaacaaccaaggttcatcaagtattgatatagagtgacccgtaccaatacaccaacgcgccccaccgcgcactatga |
43219419 |
T |
|
| Q |
242 |
agcaaaccttcaaaatacttctcattacatagctaggtttgtgacctagattcaacgtcaagtaactacgggaaggaaagtaccgcgcattgtaaatacg |
341 |
Q |
| |
|
| | ||||||||||||||||| |||||||||| |||||||| | ||| ||||||||||||| | |||||||| || || || |||||||| || |
|
|
| T |
43219420 |
aacgcgccttcaaaatacttctccaggcatagctaggattgtgacccaaattagtcgtcaagtaactatgagaaggaaaatatcgagccttgtaaatgcg |
43219519 |
T |
|
| Q |
342 |
agagacaacataatcaagt--tatctgaaatttcaaacctttgtttccctaacacagcca |
399 |
Q |
| |
|
|||||||| | ||||| || | || ||||||| |||| |||||||||||||| ||||| |
|
|
| T |
43219520 |
agagacaagagaatcaggttctgtcagaaattttcaacc-ttgtttccctaacatagcca |
43219578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 111 - 349
Target Start/End: Complemental strand, 4609010 - 4608770
Alignment:
| Q |
111 |
aaaatccctcacaaagtttacccccacaatatttccatctatgtgatcctcattcactaaccatggttcatcaagtatagatatagagtgatccgtactg |
210 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||||||||| | ||| |||||| ||||||| |||| ||||||||||||||||||| | ||| |
|
|
| T |
4609010 |
aaaatccctcacaaagtttttccccacactatttccatctatgcggtccccattcaaaaaccatgactcatgaagtatagatatagagtgactcatacca |
4608911 |
T |
|
| Q |
211 |
atacaccaatgtgccctgttgtgcaccatgaagc--aaaccttcaaaatacttctcattacatagctaggtttgtgacctagattcaacgtcaagtaact |
308 |
Q |
| |
|
|||||| |||||| || | |||||| ||||||| | |||| |||||||||||| |||||| ||||| |||||||||| ||| ||||||||| | |
|
|
| T |
4608910 |
atacacaaatgtgacccatggtgcactatgaagcgtacgcctttaaaatacttctcgatacataactaggattgtgacctaaatttttcgtcaagtagtt |
4608811 |
T |
|
| Q |
309 |
acgggaaggaaagtaccgcgcattgtaaatacgagagacaa |
349 |
Q |
| |
|
|| | ||||||| ||||| || ||||||||||||||||||| |
|
|
| T |
4608810 |
acagaaaggaaaataccgagccttgtaaatacgagagacaa |
4608770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0112
Description:
Target: scaffold0112; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 249 - 390
Target Start/End: Complemental strand, 33306 - 33164
Alignment:
| Q |
249 |
cttcaaaatacttctcattacatagctaggtttgtgacctagattcaacgtcaagtaactacgggaaggaaagtaccgcgcattgtaaatacgagagaca |
348 |
Q |
| |
|
||||||||||||| || |||||| ||||| | |||||||| ||| |||||||||||| | |||||||| ||||| || |||||||||||||||||| |
|
|
| T |
33306 |
cttcaaaatacttatccatacataactaggatcgtgacctaaatttgttgtcaagtaactaagagaaggaaaataccgagccttgtaaatacgagagaca |
33207 |
T |
|
| Q |
349 |
acataatcaagtta--tctgaaatttcaaacctttgtttcccta |
390 |
Q |
| |
|
| | ||||| |||| ||||||||||| |||| ||||||||||| |
|
|
| T |
33206 |
agagaatcaggttatgtctgaaatttccaacc-ttgtttcccta |
33164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 249 - 390
Target Start/End: Original strand, 17687 - 17829
Alignment:
| Q |
249 |
cttcaaaatacttctcattacatagctaggtttgtgacctagattcaacgtcaagtaactacgggaaggaaagtaccgcgcattgtaaatacgagagaca |
348 |
Q |
| |
|
||||||||||||| || |||||| ||||| | |||||||| ||| |||||||||||||| |||||||| |||| || |||||||||||||||||| |
|
|
| T |
17687 |
cttcaaaatacttatccatacataactaggatcgtgacctaaatttgttgtcaagtaactacgagaaggaaaataccaagccttgtaaatacgagagaca |
17786 |
T |
|
| Q |
349 |
acataatcaagtta--tctgaaatttcaaacctttgtttcccta |
390 |
Q |
| |
|
| | ||||| |||| ||| ||||||| |||| ||||||||||| |
|
|
| T |
17787 |
agagaatcaggttatgtctaaaatttccaacc-ttgtttcccta |
17829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University