View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708_low_14 (Length: 468)
Name: NF7708_low_14
Description: NF7708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 13753533 - 13753299
Alignment:
| Q |
13 |
aacagctcaaaaccaaaggcaccatacaaattccataatgatttccaatctttattacagaaaaatcataagacgaattttctttgttcccagattttag |
112 |
Q |
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| T |
13753533 |
aacagctcaaaaccaaaggcacgatacaaattccataatgatttccaatctttattacagaaaaatcataagacgaattttctttgttcccagattttag |
13753434 |
T |
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| Q |
113 |
tgtatcatgttcaaagcatccccctcctcaattaacttctgatcatatttactggtctatttgtaccgataatataaagtttgttgaaagactaataacc |
212 |
Q |
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| T |
13753433 |
tgtatcatgttcaaagcat-cccctcctcaaataacttctgatcatatttactggtctatttgtactgataatataaagtttgttgaaagactaataacc |
13753335 |
T |
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| Q |
213 |
tgttaggtactgcgttgtgtttctcaaaaccattgt |
248 |
Q |
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| T |
13753334 |
tgttaggtactgcgttgtgtttctcaaaaccattgt |
13753299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 249 - 445
Target Start/End: Complemental strand, 13753218 - 13753017
Alignment:
| Q |
249 |
tataggaaacacagaactaaacaatcactaatctttcaaatttt-----tagtatgagttccttgaagaaatagaaatttccttaacttggaatgtgtgt |
343 |
Q |
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| T |
13753218 |
tataggaaacacataactaaacaatcactaatctttcaaattttggttatagtatgagttccttgaataaatagaaatttccttaacttgaaatgtgtgt |
13753119 |
T |
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| Q |
344 |
gattttacttgatagaaacaagcatcaatttataaattattttgatatatataaatacatcaaagtttacacactcataatgtaataggaagtaacatct |
443 |
Q |
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| T |
13753118 |
gattttacttgatagaaacaagcatcaatttataaattattttgatacatataagtacatcaaagtctacacactcataatgtaatagaaagtaacatct |
13753019 |
T |
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| Q |
444 |
tc |
445 |
Q |
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| T |
13753018 |
tc |
13753017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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