View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708_low_17 (Length: 374)
Name: NF7708_low_17
Description: NF7708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 14 - 352
Target Start/End: Complemental strand, 52034684 - 52034346
Alignment:
| Q |
14 |
agaacacgttgtcatttgggcatgtccatggactacctttgggaagttgatcttcatggcatatgttctttattgaacctagcaaccaccatgccacacc |
113 |
Q |
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| T |
52034684 |
agaacacgttgtcatttgggcatgtccatggactacctttgggaagttgatcttcatggcatatgttctttattgaacctagcaaccaccatgccacacc |
52034585 |
T |
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| Q |
114 |
aacatccactgttccagctataagagtacctaaaatctgtggcatcaattttacgagcatcattagcattcaccatttagaataactatgaaaggaaata |
213 |
Q |
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| T |
52034584 |
aacatccactgttccagctataagagtacctaaaatctgtggcatcaattttacgagcatcattagtattcaccatttaaaataactatgaaaggaaata |
52034485 |
T |
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| Q |
214 |
gcctgagacaatatacctgaactatgaacattgaccttggtgggatcttcatgtaatgtcctaacttgaaatcagataaaaaggaaatagcttgagacat |
313 |
Q |
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| T |
52034484 |
gcctgagacaatatacctgaactatgaacattgaccttggtgggatcttcatgtaatgtcctaacttgaaatcagataaaaaggaaatagcttgagacat |
52034385 |
T |
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| Q |
314 |
actcatatacccgtaggtcttgaagcaaacgttggctat |
352 |
Q |
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| T |
52034384 |
actcatatacccgtaggtcttgaagcaaacgttggctat |
52034346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 115
Target Start/End: Complemental strand, 36902971 - 36902890
Alignment:
| Q |
34 |
catgtccatggactacctttgggaagttgatcttcatggcatatgttctttattgaacctagcaaccaccatgccacaccaa |
115 |
Q |
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| T |
36902971 |
catgtccatggactgcctttgggaagaagatctttattacatatgtttttgactgagtctagcaaccaccatgctacaccaa |
36902890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 287
Target Start/End: Original strand, 2171112 - 2171172
Alignment:
| Q |
227 |
tacctgaactatgaacattgaccttggtgggatcttcatgtaatgtcctaacttgaaatca |
287 |
Q |
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||||||||||| ||||||||| ||||| ||||| |||||||| ||||| | |||||||||| |
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| T |
2171112 |
tacctgaactaagaacattgatcttggagggattttcatgtagtgtccaagcttgaaatca |
2171172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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