View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7708_low_2 (Length: 651)

Name: NF7708_low_2
Description: NF7708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7708_low_2
NF7708_low_2
[»] chr8 (2 HSPs)
chr8 (2-370)||(41311027-41311395)
chr8 (7-359)||(43164710-43165062)
[»] chr7 (9 HSPs)
chr7 (7-294)||(30165608-30165883)
chr7 (2-349)||(30124981-30125328)
chr7 (458-549)||(30131424-30131515)
chr7 (105-220)||(28180965-28181080)
chr7 (490-617)||(30125466-30125593)
chr7 (135-245)||(30131068-30131178)
chr7 (135-241)||(30120068-30120174)
chr7 (313-358)||(28180514-28180559)
chr7 (4-37)||(30130934-30130967)
[»] chr2 (2 HSPs)
chr2 (120-353)||(21426470-21426703)
chr2 (274-358)||(21430161-21430244)
[»] scaffold1051 (1 HSPs)
scaffold1051 (275-343)||(1971-2039)


Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 2 - 370
Target Start/End: Original strand, 41311027 - 41311395
Alignment:
Q  2 attgtgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtag 101  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41311027 attgcgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtag 41311126  T
Q  102 agtaatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcata 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41311127 agtaatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcata 41311226  T
Q  202 aatcagccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagcttgcagtattcttataaggcaaatcagaatcaaactcaatt 301  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41311227 aaccagccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagcttgcagtattcttataaggcaaatcagaatcaaactcaatt 41311326  T
Q  302 tgttcccattgattacctctcaatgagaacatctccaagtcaattgaactagataccatgtatttttat 370  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41311327 tgttcccattgattacctctcaatgagaaaatctccaagtcaattgaactagataccatgtatttttat 41311395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 359
Target Start/End: Original strand, 43164710 - 43165062
Alignment:
Q  7 gtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtagagtaa 106  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||| || ||||||| || || ||||| |||||||||||   | | |||  ||    
T  43164710 gtattcttgcattacccatatcttaagtgtagacatctccatattccatacgctgataagtccgcgaagtaccaacaaatcataaaggttgggagaaaaa 43164809  T
Q  107 tcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatca 206  Q
    |||||||||||| ||||||| |||||| ||||||||| |||| |||||||||||||| |||||||||||||||| |||||||||| || || ||||| ||    
T  43164810 tcactataaaaatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataataacatctatttcagtctcataattataaacca 43164909  T
Q  207 gccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagcttgcagtattcttataaggcaaatcagaatcaaactcaatttgttc 306  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||| | ||  ||| ||||||||  |||||||||||||||||||||||||||||||||    
T  43164910 gccaatgaatagaaccattcaagaacgacccgactctgggagcaccttcaggtctttcagtattccaataaggcaaatcagaatcaaactcaatttgttc 43165009  T
Q  307 ccattgattacctctcaatgagaacatctccaagtcaattgaactagatacca 359  Q
    ||||| |||| ||||||||||||| |||||||||||||| |||||||||||||    
T  43165010 ccattcattagctctcaatgagaaaatctccaagtcaatcgaactagatacca 43165062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 1e-55; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 7 - 294
Target Start/End: Complemental strand, 30165883 - 30165608
Alignment:
Q  7 gtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtagagtaa 106  Q
    |||||||||||||||||||||||||| ||||| | |||||| |||||||||||| |||||||    |||||||| ||||||||||||||               
T  30165883 gtattcttgcatcacccatatcttaactgtagacctctccacattccatacactgataagtccatgaaataccaacaaatcataaattc----------- 30165795  T
Q  107 tcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatca 206  Q
     ||| | || || ||| ||| |||||  |||||| || ||||  ||||||||||||||||||||||||||||||||||||||||| || || ||||| ||    
T  30165794 -cacgagaacaatcatttggaagagctatctctgccattgtcgcttcctttaaatcaaaggcaataataacatccatttcagtctgataattataaacca 30165696  T
Q  207 gccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagcttgcagtattcttataaggcaaatcagaatcaaa 294  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| | ||||| |||||  ||| |||||||||||| |||||||||    
T  30165695 gccaatgaatagaaccattgaagaacgacccaactctgggaccaccttcagagcatgcagggttcctataaggcaaatgagaatcaaa 30165608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 2 - 349
Target Start/End: Original strand, 30124981 - 30125328
Alignment:
Q  2 attgtgtattcttgcatcacccatatcttaagtgtaggcatctccatattccatacactaataagtctgccaaataccatcaaatcataaattctagtag 101  Q
    |||| |||||| |||||||||| |||||||| || |  |||||| | | |||||| ||| |||||||  |||||||| | ||||||||||  |  || ||    
T  30124981 attgcgtattcatgcatcacccgtatcttaactgcatccatctcaagaatccataaactgataagtccaccaaatactaacaaatcataatctacaggag 30125080  T
Q  102 agtaatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcata 201  Q
    |||||||  |||||||| ||| ||| |||||  | ||||||| ||||  |||||||||||||||||||| |||||||||| | |  |||| || || ||     
T  30125081 agtaatcggtataaaaatcatttggaagagctatttctgacattgtcgcttcctttaaatcaaaggcaacaataacatccttgttggtctcatgattatg 30125180  T
Q  202 aatcagccaatgaatagaaccattcaagaacgacccaactctgggaccaccattagagcttgcagtattcttataaggcaaatcagaatcaaactcaatt 301  Q
    || ||||||||||||||  |||||||||||| ||||||||||||| |  || |||||||  ||||||||| |||||||||||| ||||||||||||||||    
T  30125181 aaccagccaatgaatagtcccattcaagaacaacccaactctgggccatccgttagagcgagcagtattcctataaggcaaatgagaatcaaactcaatt 30125280  T
Q  302 tgttcccattgattacctctcaatgagaacatctccaagtcaattgaa 349  Q
    |  ||||| | |||| ||||||||| ||| ||||||||||||||||||    
T  30125281 tcctcccacttattagctctcaatgggaaaatctccaagtcaattgaa 30125328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 458 - 549
Target Start/End: Original strand, 30131424 - 30131515
Alignment:
Q  458 ataggagacagaggtatttgcttgttgacacgagtggatggattccataggtaaaggcatttgtaacagtccaataatagaaagcctctaca 549  Q
    |||||||| ||||||||||| || ||||||| ||||||||||||||||||||| ||||||||||||  ||||||||||||||| ||||||||    
T  30131424 ataggagagagaggtatttgtttattgacaccagtggatggattccataggtagaggcatttgtaaacgtccaataatagaaaccctctaca 30131515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 105 - 220
Target Start/End: Original strand, 28180965 - 28181080
Alignment:
Q  105 aatcactataaaaaccatctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaat 204  Q
    |||| ||||||||| ||||||| |||||  | ||||||| |||||||||||||||||||||||||||||||||| | ||||  |||| || || |||||     
T  28180965 aatccctataaaaatcatctggaagagctatatctgacattgtcatttcctttaaatcaaaggcaataataacaccaattttggtctcataattataaac 28181064  T
Q  205 cagccaatgaatagaa 220  Q
    ||||||||||||||||    
T  28181065 cagccaatgaatagaa 28181080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 490 - 617
Target Start/End: Original strand, 30125466 - 30125593
Alignment:
Q  490 agtggatggattccataggtaaaggcatttgtaacagtccaataatagaaagcctctacacgaacctataatatcaatgcaggattggggaggcacaaaa 589  Q
    ||||||||||||||| ||||| |||||| ||| |||||||||||||||||| ||||||||||||||| |||| | |    | ||| || |||||| ||||    
T  30125466 agtggatggattccaaaggtagaggcatgtgttacagtccaataatagaaaccctctacacgaacctctaattttaggataagatcggtgaggcaaaaaa 30125565  T
Q  590 tcaaggcttagtgaatgataagcagaat 617  Q
     |||||  ||||||||||||||||||||    
T  30125566 ccaaggtgtagtgaatgataagcagaat 30125593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 135 - 245
Target Start/End: Original strand, 30131068 - 30131178
Alignment:
Q  135 tctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacga 234  Q
    ||||||||| ||||||||||||||||| |||||| |||||||||||| ||   |||| || || ||||| ||||||||||||||  |||||||||||| |    
T  30131068 tctctgacattgtcatttcctttaaattaaaggctataataacatcccttcttgtctcataattataaaccagccaatgaatagccccattcaagaacaa 30131167  T
Q  235 cccaactctgg 245  Q
    ||| |||||||    
T  30131168 cccgactctgg 30131178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 135 - 241
Target Start/End: Original strand, 30120068 - 30120174
Alignment:
Q  135 tctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaatagaaccattcaagaacga 234  Q
    ||||||| | |||| |||||||||||||||||||||||||||||| ||| |  |||| || || || || || |||||||||||  |||||||||||| |    
T  30120068 tctctgatattgtcgtttcctttaaatcaaaggcaataataacattcatgttggtctcatgattatgaaccacccaatgaatagccccattcaagaacaa 30120167  T
Q  235 cccaact 241  Q
    |||||||    
T  30120168 cccaact 30120174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 28180514 - 28180559
Alignment:
Q  313 attacctctcaatgagaacatctccaagtcaattgaactagatacc 358  Q
    |||| ||||||||||||| ||||| || ||||||||||||||||||    
T  28180514 attagctctcaatgagaaaatctctaattcaattgaactagatacc 28180559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 30130934 - 30130967
Alignment:
Q  4 tgtgtattcttgcatcacccatatcttaagtgta 37  Q
    ||||||||||||||||||||||||||||| ||||    
T  30130934 tgtgtattcttgcatcacccatatcttaactgta 30130967  T

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Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 120 - 353
Target Start/End: Complemental strand, 21426703 - 21426470
Alignment:
Q  120 catctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaatcagccaatgaataga 219  Q
    ||||||| |||||  ||||||||| |||  ||||||||||||||| ||||||||||||||||   |  |||| |  || || || ||||||||||||||     
T  21426703 catctggaagagctatctctgacattgttgtttcctttaaatcaagggcaataataacatcccggttggtctcagaattatgaaccagccaatgaatagc 21426604  T
Q  220 accattcaagaacgacccaactctgggaccaccattagagcttgcagtattcttataaggcaaatcagaatcaaactcaatttgttcccattgattacct 319  Q
     ||||| ||||||||||| |||||||| | |   | | ||    ||||| |  |||||||||||| |||| ||| ||||||||||| ||||| || | ||    
T  21426603 cccatttaagaacgacccgactctgggccgaaattcatagacatcagtaatgatataaggcaaatgagaagcaacctcaatttgtttccatttatgagct 21426504  T
Q  320 ctcaatgagaacatctccaagtcaattgaactag 353  Q
    ||||||||||| |||| |||||||||||||||||    
T  21426503 ctcaatgagaaaatcttcaagtcaattgaactag 21426470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 274 - 358
Target Start/End: Complemental strand, 21430244 - 21430161
Alignment:
Q  274 ataaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtcaattgaactagatacc 358  Q
    ||||||||||| |||| ||| |||||||| |||| |||||||| ||||||||||||| ||||| |||||||||||||||||||||    
T  21430244 ataaggcaaatgagaagcaacctcaattttttcc-attgattagctctcaatgagaaaatctctaagtcaattgaactagatacc 21430161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1051 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1051
Description:

Target: scaffold1051; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 275 - 343
Target Start/End: Original strand, 1971 - 2039
Alignment:
Q  275 taaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaacatctccaagtca 343  Q
    |||||||||  |||| ||||||||||||||| ||| | |||| ||||||||||||| ||||||||||||    
T  1971 taaggcaaaggagaaccaaactcaatttgtttccacttattagctctcaatgagaaaatctccaagtca 2039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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