View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708_low_20 (Length: 364)
Name: NF7708_low_20
Description: NF7708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708_low_20 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 42068910 - 42069278
Alignment:
| Q |
1 |
aatgcaactgtcagaaaagagcttgattatcaagattttaatacaaattaatttataagacattaatataaacacacactctcttcagagatgaactctt |
100 |
Q |
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| T |
42068910 |
aatgcaactgtcagaaaagagcttgattatcaagattttaatacaaattaatttataagacattaatataaacacacactctcttcagagatgaactctt |
42069009 |
T |
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| Q |
101 |
acaagctgccttttgtggttgaggcgctgctggatggaaaacgcttaaagctttaacaaactctccaaaatctatcataccatcattttttgagtcaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42069010 |
acaagctgccttttgtggttgaggcgctgctggatggaaaacgcttaaagctttaacaaactctccaaaatctatcataccatcattttttgagtcaaat |
42069109 |
T |
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| Q |
201 |
atattgaacacctgcttacaaatctagtcaaagcagtgtatggtatatactctgc-----taatataatataatatagtgatgtacacaaatcaataata |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42069110 |
atattgaacacctgcttacaaatctagtcaaagcagtgtatggtatatactctgctaatataatataatataatatagtgatgtacacaaatcaataata |
42069209 |
T |
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| Q |
296 |
tactatgctgaccctgtcgccaaagagattctgtttcttgctgcttccgaataagccaagttgaaactc |
364 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42069210 |
tactatgctgaccctgtcaccaaagagattctgtttcttgctgcttccgaataagccaagttgaaactc |
42069278 |
T |
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