View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708_low_23 (Length: 352)
Name: NF7708_low_23
Description: NF7708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 3660765 - 3660456
Alignment:
| Q |
18 |
gatacaaagattagacctatatcaattcggctggattaacacgtctctttgagattttaaactcaaagagtttttccttctgcctaatctggtgtaaaat |
117 |
Q |
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| T |
3660765 |
gatacaaagattggacctatatcaattcggctggattaacacgtctctttgacattttaaactcaaagaggttttccttctgcctaatctggtgtaaaat |
3660666 |
T |
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| Q |
118 |
ggggtagggtggtttggtctgtcgagtttaaaaaattcttttttacacttgttttcatttataagtcacaatccattttctaatttctccttcatagagg |
217 |
Q |
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| T |
3660665 |
ggggtagggtggtttggtctatcgagtttaaaaaactcttttttacacttgttttcatttataagtcacaatccattttctaatttctccttcatagagg |
3660566 |
T |
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| Q |
218 |
agggaaaaagtcattgaatttaattacttttatttaacaattttaacctca---tgtttctaataact--ttaattggtgagttcatgaacgttttattt |
312 |
Q |
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| T |
3660565 |
agggaaaaagtcattgaatttaattacttttatttaacaattttaacctcatattgtttctaataactcgttaattggtgagttcatgaacgttttattt |
3660466 |
T |
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| Q |
313 |
tggttgtctt |
322 |
Q |
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| T |
3660465 |
tggttgtctt |
3660456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 307 - 340
Target Start/End: Complemental strand, 3660438 - 3660405
Alignment:
| Q |
307 |
ttattttggttgtcttgttgacttgttatatatt |
340 |
Q |
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| T |
3660438 |
ttattttggttgtcttgttgacttgttatatatt |
3660405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 20082001 - 20081956
Alignment:
| Q |
158 |
ttttacacttgttttcatttataagtcacaatccattttctaattt |
203 |
Q |
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| T |
20082001 |
ttttacacgtttttttatttataagtcacaatcaattttctaattt |
20081956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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