View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708_low_24 (Length: 347)
Name: NF7708_low_24
Description: NF7708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 160 - 325
Target Start/End: Original strand, 11358060 - 11358224
Alignment:
| Q |
160 |
gatggatcaaacctagacatggnnnnnnngttaatccactgagctacaccatcagaatagtttctgattttttgttgttgttatatacatgtaacatgcc |
259 |
Q |
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| T |
11358060 |
gatggatcaaacctagacatggtttttttgttaatccactgagctacaccatcagaatagtttctgattttttgttgtt-ttatatacatgtaacatgcc |
11358158 |
T |
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| Q |
260 |
atgttttagagtaatttgttcttttttccttcaataaactatcaatttgaaatgcacctagttgcg |
325 |
Q |
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| T |
11358159 |
atgttttagagtaatttgttcttttttccttcaataaactatcaatttgaaatgcacctagttgcg |
11358224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 11357916 - 11357992
Alignment:
| Q |
16 |
ggagatactcaaaatcaggtctaaatctgatatgaatgcatttcatgttgcagctaagcgtggccatttgggtatag |
92 |
Q |
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| T |
11357916 |
ggagatactcaaaatcaggtctaaatctgatatgaatgcatttcacgttgcagctaagcgtggccatttgggtatag |
11357992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 82
Target Start/End: Original strand, 44397335 - 44397382
Alignment:
| Q |
35 |
tctaaatctgatatgaatgcatttcatgttgcagctaagcgtggccat |
82 |
Q |
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| T |
44397335 |
tctaagtctgatatgaacgcttttcatgttgcagctaagcgtggccat |
44397382 |
T |
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