View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708_low_25 (Length: 332)
Name: NF7708_low_25
Description: NF7708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 20 - 325
Target Start/End: Complemental strand, 35094418 - 35094113
Alignment:
| Q |
20 |
atattaggaagtggttgtcacagttcatcctataaggctgctttgttgactggccctactgttgtcgtcaaaagatacaaacaaatgaacaatgttaata |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35094418 |
atattaggaagtggttgtcacagttcatcctataaggctgctttgttgactggccctactgttgtcgtcaaaagatacaaacaaatgaacaatgttaata |
35094319 |
T |
|
| Q |
120 |
ggccagagtttcaagagcacatgagaagactgggaaggttgaatcatccgaatctccttcctctcgtagcttactactacaaaagagacgagaaactttt |
219 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35094318 |
ggccagagtttcaagagcacatgagaagactaggaaggttgaatcatccgaatctccttcctctcgtagcttactactacaaaagagacgagaaactttt |
35094219 |
T |
|
| Q |
220 |
catcaccgactttgttcccaatggaagcttggccgttcgccttcacggtattttcattttcacttcaactaataaacatcatagaatataagtttaatat |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35094218 |
catcaccgactttgttcccaatggaagcttggccgttcgccttcacggtattttcattttcacttcaactaataaacatcagagaatataagtttaatat |
35094119 |
T |
|
| Q |
320 |
tcttcg |
325 |
Q |
| |
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| |||| |
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| T |
35094118 |
ttttcg |
35094113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 270 - 309
Target Start/End: Original strand, 32863427 - 32863466
Alignment:
| Q |
270 |
ttttcattttcacttcaactaataaacatcatagaatata |
309 |
Q |
| |
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|||||||||| |||||||||||||||||| |||||||||| |
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| T |
32863427 |
ttttcatttttacttcaactaataaacatgatagaatata |
32863466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 320
Target Start/End: Original strand, 14390477 - 14390526
Alignment:
| Q |
271 |
tttcattttcacttcaactaataaacatcatagaatataagtttaatatt |
320 |
Q |
| |
|
||||||||||||||||||||| |||||| ||| ||||||| || |||||| |
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|
| T |
14390477 |
tttcattttcacttcaactaaaaaacatgatacaatataaattcaatatt |
14390526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 320
Target Start/End: Complemental strand, 47364879 - 47364829
Alignment:
| Q |
270 |
ttttcattttcacttcaactaataaacatcatagaatataagtttaatatt |
320 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||| |||| ||||||||| |
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| T |
47364879 |
ttttcattttcacttcaactaataaacataaaagaaaataaatttaatatt |
47364829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 308
Target Start/End: Complemental strand, 13806182 - 13806144
Alignment:
| Q |
270 |
ttttcattttcacttcaactaataaacatcatagaatat |
308 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||| |
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|
| T |
13806182 |
ttttcattttcacttcaactaataaacataagagaatat |
13806144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 309
Target Start/End: Original strand, 10195349 - 10195391
Alignment:
| Q |
267 |
gtattttcattttcacttcaactaataaacatcatagaatata |
309 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||| |||||| |
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|
| T |
10195349 |
gtattttcattttcacttcaactaatagacatgataaaatata |
10195391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 320
Target Start/End: Original strand, 43537569 - 43537619
Alignment:
| Q |
270 |
ttttcattttcacttcaactaataaacatcatagaatataagtttaatatt |
320 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
43537569 |
ttttcattttcacttcaactaataaacataggagaatatagatttaatatt |
43537619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 269
Target Start/End: Original strand, 42509285 - 42509430
Alignment:
| Q |
124 |
agagtttcaagagcacatgagaagactgggaaggttgaatcatccgaatctccttcctctcgtagcttactactacaaaagagacgagaaacttttcatc |
223 |
Q |
| |
|
||||||||||||||| |||||||| | ||||||||||| ||||| ||| | ||||||| || |||||||| || | || ||| ||||| || || | |
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| T |
42509285 |
agagtttcaagagcatatgagaaggattggaaggttgaaccatcctaatttgattcctcttgttgcttactattatagaaaagaagagaagctcttggtt |
42509384 |
T |
|
| Q |
224 |
accgactttgttcccaatggaagcttggccgttcgccttcacggta |
269 |
Q |
| |
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||||||||||||| || || ||| | || ||||||||||| |||| |
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| T |
42509385 |
accgactttgttcagaacggtagcctagctgttcgccttcatggta |
42509430 |
T |
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