View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708_low_26 (Length: 318)
Name: NF7708_low_26
Description: NF7708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 28471503 - 28471205
Alignment:
| Q |
1 |
agtttatgttaatattgttgaagatgaggttggtgattggtttccacaatcttatccaattcataagaaagatttcaatgtttattttgttcattacaac |
100 |
Q |
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| T |
28471503 |
agtttatgttaatattgttgaagatgaggttggtgattggtttccacaatcttatccaattcataagaaagatttcaatgtttattttgttcattacaac |
28471404 |
T |
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| Q |
101 |
acttctattatgttgtcacacgtgaaaggaccgcgtgttacatttgtttatcatccagaattaaatgagaattttaaggatgaagctaaggttaatgtcg |
200 |
Q |
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| T |
28471403 |
acttctattatgttgtcacacgtgaaaggaccgcgtgttacatttgtttatcatccagaattaaatgagaattttaaggatgaagctaaggttaatgtcg |
28471304 |
T |
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| Q |
201 |
gggaagcagatgtgaaagaagatgaagagtttgatttggttgcttggtttaaagaaactgtggagaatgctgattttgttatggttaagatgaatattg |
299 |
Q |
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| T |
28471303 |
gggaagcagatgtgaaagaagatgaagagtttgatttggttgcttggtttaaagaaactgtggagaatgctgattttgttatggttaagatgaatattg |
28471205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 153
Target Start/End: Original strand, 40806698 - 40806798
Alignment:
| Q |
53 |
tatccaattcataagaaagatttcaatgtttattttgttcattacaacacttctattatgttgtcacacgtgaaaggaccgcgtgttacatttgtttatc |
152 |
Q |
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| T |
40806698 |
tatcctattgatcagaaagctttcaatgtgtattttgttcactacaacacttctataatgttgtcttatgtgaaaagacctggtatcacgtttgtttatc |
40806797 |
T |
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| Q |
153 |
a |
153 |
Q |
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| T |
40806798 |
a |
40806798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 40806875 - 40806931
Alignment:
| Q |
224 |
gaagagtttgatttggttgcttggtttaaagaaactgtggagaatgctgattttgtt |
280 |
Q |
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| T |
40806875 |
gaagagtttgatttccttgcttggttcaaagaaactgtgcaatatgctgattttgtt |
40806931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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