View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708_low_27 (Length: 313)
Name: NF7708_low_27
Description: NF7708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 40681235 - 40681538
Alignment:
| Q |
18 |
acataagcttgtgttggaacattgcaacaacttgtttcgaataatcaaggtatttatgcatgtatattgatgc--ttttcttcaacttatgtgtttgatt |
115 |
Q |
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| T |
40681235 |
acataagcttgtgttggaacattgcaacaacttctttcgaataatcaaggtatttatgcatgtatattgatgcaattttcttcaacttatgtgtttgatt |
40681334 |
T |
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| Q |
116 |
tcagctactgtctgtgttacaagtttttg--------------tgacctaccagtaaaagaaatctcttttaattatcttcagtctttgtattagaatga |
201 |
Q |
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| T |
40681335 |
tcagctactgtctgtgttacaagtttttgctgttctgtttttgtgacctaccagtaaaagaaatctcttttaattatcttcagtctttgtattagaatga |
40681434 |
T |
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| Q |
202 |
gtaaaagacatgcataaataatattgcagttgcgtttttcaattgacattgacaatataatacattactatagtgtctaagttcccatattatagagtat |
301 |
Q |
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| T |
40681435 |
gtaaaagacatgcataa----tattgcagttgcgtttttcaattgacattgacaatataatacattactatagtgtctaagttcccatattatagagtaa |
40681530 |
T |
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| Q |
302 |
aatctacc |
309 |
Q |
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| T |
40681531 |
aatatacc |
40681538 |
T |
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