View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708_low_29 (Length: 297)
Name: NF7708_low_29
Description: NF7708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 279
Target Start/End: Original strand, 3677867 - 3678131
Alignment:
| Q |
18 |
gaagacacacctaatccgagaagtgtctctgcttcatcacattcatctatgtgactaaaaaatgtatgaatagatagggttgaaaaggagggggtaaatt |
117 |
Q |
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| T |
3677867 |
gaagacacgcctaatccgaaaagtgtcactgcttcatcactttcatctatgtgactaaaaaatgcatgaatagatagggttgaaaacaagggggtaaatt |
3677966 |
T |
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| Q |
118 |
aatcaagttttcctttaaaacattttgcaaaatagcctaggaaacacacacacagatatgaagtggtgagtgagttcacataagattattgatattcaca |
217 |
Q |
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| T |
3677967 |
aatcaagttttcctttaaatcattttgcaaaatagcctaggaaacacacacacaaaaatgaagtggtgagtgagttcacataagactattgatattcaca |
3678066 |
T |
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| Q |
218 |
agataaaagtgaaa---ataacatattttattgattgtgtacaaggtggtgccatctgcaatttt |
279 |
Q |
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| T |
3678067 |
agataaaagtgaaaaatataacatattttattgattgtgtacaaggtggtgccatctgcaatttt |
3678131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 3685606 - 3685657
Alignment:
| Q |
229 |
aaaataacat-attttattgattgtgtacaaggtggtgccatctgcaatttt |
279 |
Q |
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| T |
3685606 |
aaaataacattattttattgattgtgtactaggtggtgccttctgcaatttt |
3685657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 3669060 - 3669110
Alignment:
| Q |
229 |
aaaataacatattttattgattgtgtacaaggtggtgccatctgcaatttt |
279 |
Q |
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| T |
3669060 |
aaaataacatattctattgattgtgtacaaggtgatagcttctgcaatttt |
3669110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 261
Target Start/End: Original strand, 3662739 - 3662772
Alignment:
| Q |
228 |
gaaaataacatattttattgattgtgtacaaggt |
261 |
Q |
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| T |
3662739 |
gaaaataacagattttattgattgtgtacaaggt |
3662772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 6247694 - 6247727
Alignment:
| Q |
21 |
gacacacctaatccgagaagtgtctctgcttcat |
54 |
Q |
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| T |
6247694 |
gacacacctaatccgagaagtgtctgtgcttcat |
6247727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 53
Target Start/End: Original strand, 21367350 - 21367382
Alignment:
| Q |
21 |
gacacacctaatccgagaagtgtctctgcttca |
53 |
Q |
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| T |
21367350 |
gacacacctaatccgagaagtgtctgtgcttca |
21367382 |
T |
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