View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708_low_32 (Length: 290)
Name: NF7708_low_32
Description: NF7708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 97 - 275
Target Start/End: Original strand, 6815688 - 6815872
Alignment:
| Q |
97 |
aatagaaatttctatcaatcttaaacnnnnnnntaatttgaacatattaaatata--acaataac----aatcagtcttccttctcaacattccaaatgg |
190 |
Q |
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| T |
6815688 |
aatagaaatttctatcaatcttaaacaaaaaaataatttgaacatattaaatatataacaataactaacaatcagtcttccttctcaacattccaaatgg |
6815787 |
T |
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| Q |
191 |
ttcaaacaatgattgataatcaaagtcaaagcaaattcaatttaccatccagcaatccatatcagatatatttactacataacat |
275 |
Q |
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| T |
6815788 |
ttcaaacaatgattgataatcaaagtcaaagcaaattcaattcaccatccagcaatccatatcagatatatttaatacataacat |
6815872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 17 - 119
Target Start/End: Original strand, 6815550 - 6815651
Alignment:
| Q |
17 |
gaccaacgtattctattcaatccattcatatatactaatgcaatatttacaaactatttgttaaacaaacaaattagacaaatagaaatttctatcaatc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6815550 |
gaccaacgtattctattcaatccattcatatatactaatgcaatatttacaaactatttgttaaacaaacaaattagac-aatagaaatttctatcaatc |
6815648 |
T |
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| Q |
117 |
tta |
119 |
Q |
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| T |
6815649 |
tta |
6815651 |
T |
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