View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7708_low_33 (Length: 286)
Name: NF7708_low_33
Description: NF7708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708_low_33 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 16485048 - 16485307
Alignment:
| Q |
18 |
agaaccacttccttctcaataagacactattgtctatggtcaagtaaaaaagacccatacttagaatcagcactatcacgcaacaaacgttggataatta |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16485048 |
agaaccacttccttctcaaaaagacactattgtctatggtcaagtaaaaaagacccatacttagaatcagcactatcacgcaacaaacgttggataatta |
16485147 |
T |
|
| Q |
118 |
acaaccaaatcaaaaacattatccttcgttaccctaacaaccaaatcccaatcctaacccttcagaagaaattcaaaaccctagatcttcatggtaaagc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
16485148 |
acaaccaaatcaaaaacattatccttcgttaccctaacaaccaaatcccaatcctaacccttcagaagaaattcaaaaccctagatcttcaaggtaaagc |
16485247 |
T |
|
| Q |
218 |
tcttaattggatttccaaatacccttcttgcttccagtttcatcaagatcacgttcttct |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16485248 |
tcttaattggatttccaaatacccttcttgcttccagtttcatcaagatcacgttcttct |
16485307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 32 - 277
Target Start/End: Original strand, 9459078 - 9459323
Alignment:
| Q |
32 |
ctcaataagacactattgtctatggtcaagtaaaaaagacccatacttagaatcagcactatcacgcaacaaacgttggataattaacaaccaaatcaaa |
131 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
9459078 |
ctcaaaaagacactattgtctatggtcaagtaaaaaagacccagacttagaatcagcactatcgcgaaacaaacgttggataattaacaaccaaatcaaa |
9459177 |
T |
|
| Q |
132 |
aacattatccttcgttaccctaacaaccaaatcccaatcctaacccttcagaagaaattcaaaaccctagatcttcatggtaaagctcttaattggattt |
231 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| |
|
|
| T |
9459178 |
aacattatcctccgttaccctaacaaccaaatcccaattcaaactcttcagaagaaattcaaaaccctagatcttcaaggtaaagcccttaactggattt |
9459277 |
T |
|
| Q |
232 |
ccaaatacccttcttgcttccagtttcatcaagatcacgttcttct |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9459278 |
ccaaatacccttcttgcttccagtttcatcaagatcacgttcttct |
9459323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 32 - 132
Target Start/End: Original strand, 9470401 - 9470502
Alignment:
| Q |
32 |
ctcaataagacactattgtctatggtcaagtaaaaa-agacccatacttagaatcagcactatcacgcaacaaacgttggataattaacaaccaaatcaa |
130 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||| || ||||||| |||||||||||||||||||||||| |
|
|
| T |
9470401 |
ctcaaaaagacactattgtctatggtcatgtaaaaacagacccaaacttagaatcagcactatcgcgaaacaaacattggataattaacaaccaaatcaa |
9470500 |
T |
|
| Q |
131 |
aa |
132 |
Q |
| |
|
|| |
|
|
| T |
9470501 |
aa |
9470502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 219 - 277
Target Start/End: Original strand, 9470506 - 9470564
Alignment:
| Q |
219 |
cttaattggatttccaaatacccttcttgcttccagtttcatcaagatcacgttcttct |
277 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9470506 |
cttaactggatttccaaatacccttcttgcttccagtttcatcaagatcacgttcttct |
9470564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 44599499 - 44599758
Alignment:
| Q |
18 |
agaaccacttccttctcaataagacactattgtctatggtcaagtaaaaaagacccatacttagaatcagcactatcacgcaacaaacgttggataatta |
117 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44599499 |
agaaccacttccttctcaaaaagacactattgtctatggtcaagtaaaaaagacccatacttagaatcagcactatcacgcaacaaacgttggataatta |
44599598 |
T |
|
| Q |
118 |
acaaccaaatcaaaaacattatccttcgttaccctaacaaccaaatcccaatcctaacccttcagaagaaattcaaaaccctagatcttcatggtaaagc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
44599599 |
acaaccaaatcaaaaacattatccttcgttaccctaacaaccaaatcccaatcctaacccttcagaagaaattcaaaaccctagatcttcaaggtaaagc |
44599698 |
T |
|
| Q |
218 |
tcttaattggatttccaaatacccttcttgcttccagtttcatcaagatcacgttcttct |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44599699 |
tcttaattggatttccaaatacccttcttgcttccagtttcatcaagatcacgttcttct |
44599758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 32 - 277
Target Start/End: Original strand, 5722486 - 5722731
Alignment:
| Q |
32 |
ctcaataagacactattgtctatggtcaagtaaaaaagacccatacttagaatcagcactatcacgcaacaaacgttggataattaacaaccaaatcaaa |
131 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
5722486 |
ctcaaaaagacactattgtctatggtcaagtaaaaaagacccagacttagaatcagcattatcgcgaaacaaacgttggataattaacaaccaaatcaaa |
5722585 |
T |
|
| Q |
132 |
aacattatccttcgttaccctaacaaccaaatcccaatcctaacccttcagaagaaattcaaaaccctagatcttcatggtaaagctcttaattggattt |
231 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| |
|
|
| T |
5722586 |
aacattatcctccgttaccctaacaaccaaatcccaattcaaactcttcagaagaaattcaaaaccctagatcttcaaggtaaagcccttaactggattt |
5722685 |
T |
|
| Q |
232 |
ccaaatacccttcttgcttccagtttcatcaagatcacgttcttct |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5722686 |
ccaaatacccttcttgcttccagtttcatcaagatcacgttcttct |
5722731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 106 - 281
Target Start/End: Complemental strand, 1884949 - 1884774
Alignment:
| Q |
106 |
gttggataattaacaaccaaatcaaaaacattatccttcgttaccctaacaaccaaatcccaatcctaacccttcagaagaaattcaaaaccctagatct |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| | |||||||||||||||||||||||| |||||||| |
|
|
| T |
1884949 |
gttggataattaacaaccaaatcaaaaacattatcctccgttaccctaacaaccaaattccaattcaaacccttcagaagaaattcaaaacgctagatct |
1884850 |
T |
|
| Q |
206 |
tcatggtaaagctcttaattggatttccaaatacccttcttgcttccagtttcatcaagatcacgttcttctcact |
281 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||| |
|
|
| T |
1884849 |
tcaaggtaaagcctttaattggatttccaaatacccttcttacttccagtttcagaaagatcatgttcttctcact |
1884774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 106 - 281
Target Start/End: Complemental strand, 5564813 - 5564638
Alignment:
| Q |
106 |
gttggataattaacaaccaaatcaaaaacattatccttcgttaccctaacaaccaaatcccaatcctaacccttcagaagaaattcaaaaccctagatct |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| | ||||||| |||||||| ||||||| |||||||| |
|
|
| T |
5564813 |
gttggataattaacaaccaaatcaaaaacattatcctccgttaccctaacaaccaaattccaattcaaaccctttagaagaaagtcaaaacgctagatct |
5564714 |
T |
|
| Q |
206 |
tcatggtaaagctcttaattggatttccaaatacccttcttgcttccagtttcatcaagatcacgttcttctcact |
281 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
5564713 |
tcaaggtaaagcccttaattggatttccaaatacccttcttgcttccagtttcagaaagatcacattcttctcact |
5564638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University