View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7708_low_35 (Length: 277)

Name: NF7708_low_35
Description: NF7708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7708_low_35
NF7708_low_35
[»] chr7 (6 HSPs)
chr7 (13-259)||(30409690-30409926)
chr7 (149-228)||(30395941-30396020)
chr7 (36-81)||(30396080-30396125)
chr7 (148-193)||(40728794-40728839)
chr7 (147-179)||(45823306-45823338)
chr7 (147-191)||(46285291-46285335)
[»] chr3 (5 HSPs)
chr3 (147-193)||(21023178-21023224)
chr3 (147-186)||(4486905-4486944)
chr3 (148-190)||(42913204-42913246)
chr3 (101-135)||(48895083-48895117)
chr3 (152-193)||(51285710-51285751)
[»] chr5 (2 HSPs)
chr5 (148-193)||(3747549-3747594)
chr5 (150-190)||(9449138-9449178)
[»] chr4 (10 HSPs)
chr4 (148-193)||(3652741-3652786)
chr4 (105-193)||(22980678-22980767)
chr4 (148-192)||(33843847-33843891)
chr4 (147-193)||(5025607-5025653)
chr4 (147-193)||(5835828-5835874)
chr4 (147-193)||(54683467-54683513)
chr4 (147-192)||(17897799-17897844)
chr4 (105-193)||(22699763-22699852)
chr4 (148-193)||(24364082-24364127)
chr4 (147-179)||(39000523-39000555)
[»] chr1 (3 HSPs)
chr1 (147-192)||(22548190-22548235)
chr1 (148-193)||(5167381-5167426)
chr1 (148-192)||(213172-213216)
[»] chr2 (3 HSPs)
chr2 (148-192)||(37745789-37745833)
chr2 (148-192)||(3476334-3476378)
chr2 (148-192)||(11650662-11650706)
[»] chr8 (4 HSPs)
chr8 (147-182)||(18355750-18355785)
chr8 (149-192)||(43024963-43025006)
chr8 (147-193)||(8130065-8130111)
chr8 (147-193)||(24297553-24297599)
[»] chr6 (1 HSPs)
chr6 (147-180)||(19601369-19601402)
[»] scaffold0314 (1 HSPs)
scaffold0314 (148-184)||(17526-17562)


Alignment Details
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 13 - 259
Target Start/End: Complemental strand, 30409926 - 30409690
Alignment:
Q  13 gtgagatgaaatcaagtctcgtattttttaaaagtagctaacacacacaatcaaaagcttgatccaaacaagtcacnnnnnnnnagtgaatatatccaaa 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||    
T  30409926 gtgacatgaaatcaagtctcgtattttttaaaagtagctaacacacacaatcaaaagcttgatccaaacaagtcacttttttttagtgaatatatccaaa 30409827  T
Q  113 tacaaaccattttatattcaactacttctaacataaatcaattcaatcaaaatcaatttttatcaccacaaaaccaaacacgatttgtgaagaataggga 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||          |||| ||||||||||||||||||| ||||||||||||||||||    
T  30409826 tacaaaccattttatattcaactacttctaacataaatcaattcaat----------ttttgtcaccacaaaaccaaacacaatttgtgaagaataggga 30409737  T
Q  213 gtacgcttttgtgactgtgtcagttaaaagttttagacgtagttgat 259  Q
    |||| ||||||||||||||||||||||  ||||||||||||||||||    
T  30409736 gtacacttttgtgactgtgtcagttaagtgttttagacgtagttgat 30409690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 228
Target Start/End: Complemental strand, 30396020 - 30395941
Alignment:
Q  149 atcaattcaatcaaaatcaatttttatcaccacaaaaccaaacacgatttgtgaagaatagggagtacgcttttgtgact 228  Q
    |||||||||||||||||||||||| || | |||| ||| |||||| ||||||||||||||||||| |  |||||||||||    
T  30396020 atcaattcaatcaaaatcaattttcataagcacataacgaaacacaatttgtgaagaatagggagcaaacttttgtgact 30395941  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 30396125 - 30396080
Alignment:
Q  36 ttttttaaaagtagctaacacacacaatcaaaagcttgatccaaac 81  Q
    |||||||||||||||  |||||||||||||||||||||| ||||||    
T  30396125 ttttttaaaagtagcatacacacacaatcaaaagcttgacccaaac 30396080  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 40728794 - 40728839
Alignment:
Q  148 aatcaattcaatcaaaatcaatttttatcaccacaaaaccaaacac 193  Q
    ||||||||||||||||| |||||||| || |||||||| |||||||    
T  40728794 aatcaattcaatcaaaagcaatttttgtccccacaaaatcaaacac 40728839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 179
Target Start/End: Original strand, 45823306 - 45823338
Alignment:
Q  147 aaatcaattcaatcaaaatcaatttttatcacc 179  Q
    ||||||||||||||||||||||||||| |||||    
T  45823306 aaatcaattcaatcaaaatcaatttttgtcacc 45823338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 46285335 - 46285291
Alignment:
Q  147 aaatcaattcaatcaaaatcaatttttatcaccacaaaaccaaac 191  Q
    |||||||||  |||||||||||||||||||||| || ||||||||    
T  46285335 aaatcaattatatcaaaatcaatttttatcaccgcataaccaaac 46285291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 193
Target Start/End: Complemental strand, 21023224 - 21023178
Alignment:
Q  147 aaatcaattcaatcaaaatcaatttttatcaccacaaaaccaaacac 193  Q
    |||||||||| ||||||||||||| ||||||||||| ||||||||||    
T  21023224 aaatcaattctatcaaaatcaattattatcaccacacaaccaaacac 21023178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 186
Target Start/End: Original strand, 4486905 - 4486944
Alignment:
Q  147 aaatcaattcaatcaaaatcaatttttatcaccacaaaac 186  Q
    ||||||||| |||||||||||||| |||||||||||||||    
T  4486905 aaatcaatttaatcaaaatcaattcttatcaccacaaaac 4486944  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 190
Target Start/End: Original strand, 42913204 - 42913246
Alignment:
Q  148 aatcaattcaatcaaaatcaatttttatcaccacaaaaccaaa 190  Q
    |||||||||| |||||||||||||||||||||| | |||||||    
T  42913204 aatcaattcactcaaaatcaatttttatcaccaaacaaccaaa 42913246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 135
Target Start/End: Original strand, 48895083 - 48895117
Alignment:
Q  101 aatatatccaaatacaaaccattttatattcaact 135  Q
    |||||||||||||||||||||||||||||| ||||    
T  48895083 aatatatccaaatacaaaccattttatatttaact 48895117  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 193
Target Start/End: Original strand, 51285710 - 51285751
Alignment:
Q  152 aattcaatcaaaatcaatttttatcaccacaaaaccaaacac 193  Q
    |||||| ||||||||||||||| ||||| |||||||||||||    
T  51285710 aattcactcaaaatcaatttttctcaccgcaaaaccaaacac 51285751  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 3747594 - 3747549
Alignment:
Q  148 aatcaattcaatcaaaatcaatttttatcaccacaaaaccaaacac 193  Q
    ||||||||| |||||||||||||||||||||| || ||||||||||    
T  3747594 aatcaattctatcaaaatcaatttttatcaccgcataaccaaacac 3747549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 9449178 - 9449138
Alignment:
Q  150 tcaattcaatcaaaatcaatttttatcaccacaaaaccaaa 190  Q
    |||||| | |||||||||||||||||||||||| |||||||    
T  9449178 tcaattgattcaaaatcaatttttatcaccacataaccaaa 9449138  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 3652741 - 3652786
Alignment:
Q  148 aatcaattcaatcaaaatcaatttttatcaccacaaaaccaaacac 193  Q
    ||||||||| |||||||||||||||||||||| || ||||||||||    
T  3652741 aatcaattctatcaaaatcaatttttatcaccgcagaaccaaacac 3652786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 193
Target Start/End: Complemental strand, 22980767 - 22980678
Alignment:
Q  105 tatccaaatacaaaccattttatattcaact-acttctaacataaatcaattcaatcaaaatcaatttttatcaccacaaaaccaaacac 193  Q
    |||||||| | ||| || |||| |||||||| |||| ||||  |||||||||| | |||||||||||||| |||||||| ||||||||||    
T  22980767 tatccaaacataaatcactttacattcaacttacttttaaccaaaatcaattctaccaaaatcaatttttttcaccacacaaccaaacac 22980678  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 33843847 - 33843891
Alignment:
Q  148 aatcaattcaatcaaaatcaatttttatcaccacaaaaccaaaca 192  Q
    |||||||||||||||||||||||||| ||| |||||| |||||||    
T  33843847 aatcaattcaatcaaaatcaatttttgtcaacacaaagccaaaca 33843891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 193
Target Start/End: Original strand, 5025607 - 5025653
Alignment:
Q  147 aaatcaattcaatcaaaatcaatttttatcaccacaaaaccaaacac 193  Q
    ||||||||||||||||||||||||||  ||||| || ||||||||||    
T  5025607 aaatcaattcaatcaaaatcaattttagtcaccgcataaccaaacac 5025653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 193
Target Start/End: Original strand, 5835828 - 5835874
Alignment:
Q  147 aaatcaattcaatcaaaatcaatttttatcaccacaaaaccaaacac 193  Q
    ||||||||||||||||||||||||||  |||| ||| ||||||||||    
T  5835828 aaatcaattcaatcaaaatcaattttcgtcacaacataaccaaacac 5835874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 193
Target Start/End: Original strand, 54683467 - 54683513
Alignment:
Q  147 aaatcaattcaatcaaaatcaatttttatcaccacaaaaccaaacac 193  Q
    |||||||||| |||||||||||||||| ||||| || ||||||||||    
T  54683467 aaatcaattctatcaaaatcaatttttttcaccgcagaaccaaacac 54683513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 17897844 - 17897799
Alignment:
Q  147 aaatcaattcaatcaaaatcaatttttatcaccacaaaaccaaaca 192  Q
    ||||||||||| ||||||||||||||| ||||| || |||||||||    
T  17897844 aaatcaattcactcaaaatcaatttttgtcaccgcagaaccaaaca 17897799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 193
Target Start/End: Original strand, 22699763 - 22699852
Alignment:
Q  105 tatccaaatacaaaccattttatattcaact-acttctaacataaatcaattcaatcaaaatcaatttttatcaccacaaaaccaaacac 193  Q
    |||||||| | ||| || |||| |||||||| |||| ||||  |||||||||| | |||||||||||||| ||||| || ||||||||||    
T  22699763 tatccaaacataaatcactttacattcaacttacttttaaccaaaatcaattctaccaaaatcaatttttttcaccgcacaaccaaacac 22699852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 24364127 - 24364082
Alignment:
Q  148 aatcaattcaatcaaaatcaatttttatcaccacaaaaccaaacac 193  Q
    |||||||||| ||||||||||||||| ||| || ||||||||||||    
T  24364127 aatcaattcattcaaaatcaatttttgtcatcataaaaccaaacac 24364082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 39000555 - 39000523
Alignment:
Q  147 aaatcaattcaatcaaaatcaatttttatcacc 179  Q
    |||||||||||||||||||||||||| ||||||    
T  39000555 aaatcaattcaatcaaaatcaattttaatcacc 39000523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 22548235 - 22548190
Alignment:
Q  147 aaatcaattcaatcaaaatcaatttttatcaccacaaaaccaaaca 192  Q
    ||||||||||| | ||||||||||||||||||| ||||||||||||    
T  22548235 aaatcaattcacttaaaatcaatttttatcaccgcaaaaccaaaca 22548190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 5167381 - 5167426
Alignment:
Q  148 aatcaattcaatcaaaatcaatttttatcaccacaaaaccaaacac 193  Q
    |||||||||| |||||||||||||| |||||| || ||||||||||    
T  5167381 aatcaattcattcaaaatcaattttcatcaccgcagaaccaaacac 5167426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 213216 - 213172
Alignment:
Q  148 aatcaattcaatcaaaatcaatttttatcaccacaaaaccaaaca 192  Q
    |||||||| ||||||||||||||||| ||||| || |||||||||    
T  213216 aatcaatttaatcaaaatcaatttttgtcaccgcagaaccaaaca 213172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 37745833 - 37745789
Alignment:
Q  148 aatcaattcaatcaaaatcaatttttatcaccacaaaaccaaaca 192  Q
    |||||||||| |||||||||||| |||||||| ||||||||||||    
T  37745833 aatcaattcactcaaaatcaattattatcaccgcaaaaccaaaca 37745789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 3476378 - 3476334
Alignment:
Q  148 aatcaattcaatcaaaatcaatttttatcaccacaaaaccaaaca 192  Q
    |||||||||| | ||||||||||||| |||||||| |||||||||    
T  3476378 aatcaattcacttaaaatcaatttttgtcaccacagaaccaaaca 3476334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 11650706 - 11650662
Alignment:
Q  148 aatcaattcaatcaaaatcaatttttatcaccacaaaaccaaaca 192  Q
    |||||||||| ||||||||||||||| ||| | ||||||||||||    
T  11650706 aatcaattcactcaaaatcaatttttgtcaacgcaaaaccaaaca 11650662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 147 - 182
Target Start/End: Complemental strand, 18355785 - 18355750
Alignment:
Q  147 aaatcaattcaatcaaaatcaatttttatcaccaca 182  Q
    ||||||||||| ||||||||||||||||||||||||    
T  18355785 aaatcaattcactcaaaatcaatttttatcaccaca 18355750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 192
Target Start/End: Original strand, 43024963 - 43025006
Alignment:
Q  149 atcaattcaatcaaaatcaatttttatcaccacaaaaccaaaca 192  Q
    ||||||||||||||||||||||||| ||||| |||| |||||||    
T  43024963 atcaattcaatcaaaatcaatttttgtcaccgcaaacccaaaca 43025006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 193
Target Start/End: Complemental strand, 8130111 - 8130065
Alignment:
Q  147 aaatcaattcaatcaaaatcaatttttatcaccacaaaaccaaacac 193  Q
    |||||||||| |||||||||||||||||||||| || ||| ||||||    
T  8130111 aaatcaattctatcaaaatcaatttttatcaccgcagaactaaacac 8130065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 193
Target Start/End: Complemental strand, 24297599 - 24297553
Alignment:
Q  147 aaatcaattcaatcaaaatcaatttttatcaccacaaaaccaaacac 193  Q
    |||||||||| |||||||| ||||||||||||| || ||||||||||    
T  24297599 aaatcaattctatcaaaattaatttttatcaccgcagaaccaaacac 24297553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 180
Target Start/End: Complemental strand, 19601402 - 19601369
Alignment:
Q  147 aaatcaattcaatcaaaatcaatttttatcacca 180  Q
    ||||||||||||||||||||||||||| ||||||    
T  19601402 aaatcaattcaatcaaaatcaatttttgtcacca 19601369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 17526 - 17562
Alignment:
Q  148 aatcaattcaatcaaaatcaatttttatcaccacaaa 184  Q
    |||||||||| |||||||||||||| |||||||||||    
T  17526 aatcaattcactcaaaatcaattttcatcaccacaaa 17562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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