View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7708_low_37 (Length: 264)
Name: NF7708_low_37
Description: NF7708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708_low_37 |
 | |
|
| [»] scaffold0433 (1 HSPs) |
| | |
|
| [»] scaffold0061 (1 HSPs) |
| | |
|
| [»] scaffold0017 (1 HSPs) |
| | |
|
| [»] scaffold1376 (1 HSPs) |
| | |
|
| [»] scaffold0354 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0433 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: scaffold0433
Description:
Target: scaffold0433; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 15066 - 14812
Alignment:
| Q |
1 |
aagttacggttttgaatgaagtttttcttttgttctttgtgctttttcggttacatgcttctataatcttacagatttacacttgattcgcctttttctc |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15066 |
aagttgcggttttgaatgaagtttttcttttgttctttgtgctttttcggttacatgcttctataatcctacagatttacacttgattcgcctttttctc |
14967 |
T |
|
| Q |
101 |
tgttcttgcgaaaaagaagatgaagtttgagttttacctgtggttttcttggtgattccgaaccggatcttcaggaaaacttgaatttaatcttgttccg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14966 |
tgttcttgcgaaaaagaagatgaagtttgagttttacctgtggttttcttggtgattccgaaccggatcttcagggaaacttgaatttaatcttgttccg |
14867 |
T |
|
| Q |
201 |
ttgattctggcttggtttcttgctgttccgatcctctcttcttcttcacaggttc |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14866 |
ttgattctggcttggtttcttgctgttccgatcctctcttcttcttcacaggttc |
14812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 255
Target Start/End: Original strand, 20195034 - 20195283
Alignment:
| Q |
7 |
cggttttgaatgaagtttttcttttgttctttgtgctttttcggttacatgcttctataatcttacagatttacacttgattcgcctttttctctgttct |
106 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| || |||||| |
|
|
| T |
20195034 |
cggttttgaatgaagttttttttttgttctttgtgctttttcggttacacgcttctataatcctacagatttacacttgattcgccttttgctttgttct |
20195133 |
T |
|
| Q |
107 |
tgcgaaaaagaa-gatgaagtttgagttttacctgtggttttcttggtgattccgaaccggatcttcaggaaaacttgaatttaatcttgttccgttgat |
205 |
Q |
| |
|
|| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
20195134 |
tgagaaaaaaaaagatgaagtttgagttttacctgtggttttcttggtgattccgaaccggatcttcaggaaaacttgagtttaatcttgttctgttgat |
20195233 |
T |
|
| Q |
206 |
tctggcttggtttcttgctgttccgatcctctcttcttcttcacaggttc |
255 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20195234 |
tctggcttgatttcttgctgttccgatcctctcttcttcttcacaggttc |
20195283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 5340236 - 5340487
Alignment:
| Q |
1 |
aagttacggttttgaatgaagtttttcttttgttctttgtgctttttcggttacatgcttctataatcttacagatttacacttgattcgcctttttctc |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||| || ||| |||||||| |||| |||| |||| ||||||||| ||||||| || |
|
|
| T |
5340236 |
aagttgcggttttgaatgaagtttttcttt-gttctttgtgcttttt-ggctacgtgcttctagaatcctacatgtttatacttgattctcctttttatc |
5340333 |
T |
|
| Q |
101 |
tgttctt-gcgaaaaagaagatgaagtttgagttttacctgtggttttcttggtgattccgaaccggatcttca-ggaaaacttgaatttaatcttgttc |
198 |
Q |
| |
|
|| || |||||||| ||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||| ||||| |||| |||||||| |
|
|
| T |
5340334 |
cattttttgcgaaaaa-aag--gaagtttgagttttacctgtggttttcttggtggttccgatccggatcttcaaggaaagcttgattttagtcttgttc |
5340430 |
T |
|
| Q |
199 |
cgttgattctggcttggtttcttgctgttccgatcctctcttcttcttcacaggttc |
255 |
Q |
| |
|
|||||||||||| |||||| | |||||||| ||||| |||||||||||||||||||| |
|
|
| T |
5340431 |
cgttgattctggtttggttccctgctgttctgatccgctcttcttcttcacaggttc |
5340487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 34610817 - 34610566
Alignment:
| Q |
1 |
aagttacggttttgaatgaagtttttcttttgttctttgtgctttttcggttacatgcttctataatcttacagatttacacttgattcgcctttttctc |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||| || ||| |||||||| |||| |||| |||| ||||||||| ||||||| || |
|
|
| T |
34610817 |
aagttgcggttttgaatgaagtttttcttt-gttctttgtgcttttt-ggctacgtgcttctagaatcctacatgtttatacttgattctcctttttatc |
34610720 |
T |
|
| Q |
101 |
tgttctt-gcgaaaaagaagatgaagtttgagttttacctgtggttttcttggtgattccgaaccggatcttca-ggaaaacttgaatttaatcttgttc |
198 |
Q |
| |
|
|| || |||||||| ||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||| ||||| |||| |||||||| |
|
|
| T |
34610719 |
cattttttgcgaaaaa-aag--gaagtttgagttttacctgtggttttcttggtggttccgatccggatcttcaaggaaagcttgattttagtcttgttc |
34610623 |
T |
|
| Q |
199 |
cgttgattctggcttggtttcttgctgttccgatcctctcttcttcttcacaggttc |
255 |
Q |
| |
|
|||||||||||| |||||| | |||||||| ||||| |||||||||||||||||||| |
|
|
| T |
34610622 |
cgttgattctggtttggttccctgctgttctgatccgctcttcttcttcacaggttc |
34610566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 34625934 - 34625683
Alignment:
| Q |
1 |
aagttacggttttgaatgaagtttttcttttgttctttgtgctttttcggttacatgcttctataatcttacagatttacacttgattcgcctttttctc |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||| || ||| |||||||| |||| |||| |||| ||||||||| ||||||| || |
|
|
| T |
34625934 |
aagttgcggttttgaatgaagtttttcttt-gttctttgtgcttttt-ggctacgtgcttctagaatcctacatgtttatacttgattctcctttttatc |
34625837 |
T |
|
| Q |
101 |
tgttctt-gcgaaaaagaagatgaagtttgagttttacctgtggttttcttggtgattccgaaccggatcttca-ggaaaacttgaatttaatcttgttc |
198 |
Q |
| |
|
|| || |||||||| ||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||| ||||| |||| |||||||| |
|
|
| T |
34625836 |
cattttttgcgaaaaa-aag--gaagtttgagttttacctgtggttttcttggtggttccgatccggatcttcaaggaaagcttgattttagtcttgttc |
34625740 |
T |
|
| Q |
199 |
cgttgattctggcttggtttcttgctgttccgatcctctcttcttcttcacaggttc |
255 |
Q |
| |
|
|||||||||||| |||||| | |||||||| ||||| |||||||||||||||||||| |
|
|
| T |
34625739 |
cgttgattctggtttggttccctgctgttctgatccgctcttcttcttcacaggttc |
34625683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 25638934 - 25639185
Alignment:
| Q |
1 |
aagttacggttttgaatgaagtttttcttttgttctttgtgctttttcggttacatgcttctataatcttacagatttacacttgattcgcctttttctc |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||| || ||| |||||||| |||| |||| |||| ||||||||| ||||||| || |
|
|
| T |
25638934 |
aagttgcggttttgaatgaagtttttcttt-gttctttgtgcttttt-ggctacgtgcttctagaatcctacatgtttatacttgattctcctttttatc |
25639031 |
T |
|
| Q |
101 |
tgttctt-gcgaaaaagaagatgaagtttgagttttacctgtggttttcttggtgattccgaaccggatcttca-ggaaaacttgaatttaatcttgttc |
198 |
Q |
| |
|
|| || |||||||| ||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||| ||||| |||| |||||||| |
|
|
| T |
25639032 |
cattttttgcgaaaaa-aag--gaagtttgagttttacctgtggttttcttggtggttccgatccggatcttcaaggaaagcttgattttagtcttgttc |
25639128 |
T |
|
| Q |
199 |
cgttgattctggcttggtttcttgctgttccgatcctctcttcttcttcacaggttc |
255 |
Q |
| |
|
||||| |||||| |||||| | |||||||| ||||| |||||||||||||||||||| |
|
|
| T |
25639129 |
cgttggttctggtttggttccctgctgttctgatccgctcttcttcttcacaggttc |
25639185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 18366277 - 18366532
Alignment:
| Q |
1 |
aagttacggttttgaatgaagtttttcttttgttctttgtgctttttcggttacatgcttctataatcttacagatttacacttgattcgcctttttctc |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||| || ||| || ||||| |||| |||| |||| ||||||||| |||| || || |
|
|
| T |
18366277 |
aagttgcggttttgaatgaagtttttcttt-gttctttgtgcttttt-ggctacgtgtttctagaatcctacatgtttatacttgattctccttcttatc |
18366374 |
T |
|
| Q |
101 |
tgttctt-gcgaaaaagaagatg-aagtttgagttttacctgtggttttcttggtgattccgaaccggatcttca-ggaaaacttgaatttaatcttgtt |
197 |
Q |
| |
|
|| || |||||||| || | | |||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||| ||||| |||| ||||||| |
|
|
| T |
18366375 |
cattttttgcgaaaaaaaaaaaggaagtttgagttttacctgtggttttcttggtggttccgatccggatcttcaaggaaagcttgattttagtcttgtt |
18366474 |
T |
|
| Q |
198 |
ccgttgattctggcttggtttcttgctgttccgatcctctcttcttcttcacaggttc |
255 |
Q |
| |
|
||||||||||||| |||||| | |||||||| ||||| |||||||||||||||||||| |
|
|
| T |
18366475 |
ccgttgattctggtttggttccctgctgttctgatccgctcttcttcttcacaggttc |
18366532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 18381316 - 18381571
Alignment:
| Q |
1 |
aagttacggttttgaatgaagtttttcttttgttctttgtgctttttcggttacatgcttctataatcttacagatttacacttgattcgcctttttctc |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||| || ||| || ||||| |||| |||| |||| ||||||||| |||| || || |
|
|
| T |
18381316 |
aagttgcggttttgaatgaagtttttcttt-gttctttgtgcttttt-ggctacgtgtttctagaatcctacatgtttatacttgattctccttcttatc |
18381413 |
T |
|
| Q |
101 |
tgttctt-gcgaaaaagaagatg-aagtttgagttttacctgtggttttcttggtgattccgaaccggatcttca-ggaaaacttgaatttaatcttgtt |
197 |
Q |
| |
|
|| || |||||||| || | | |||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||| ||||| |||| ||||||| |
|
|
| T |
18381414 |
cattttttgcgaaaaaaaaaaaggaagtttgagttttacctgtggttttcttggtggttccgatccggatcttcaaggaaagcttgattttagtcttgtt |
18381513 |
T |
|
| Q |
198 |
ccgttgattctggcttggtttcttgctgttccgatcctctcttcttcttcacaggttc |
255 |
Q |
| |
|
||||||||||||| |||||| | |||||||| ||||| |||||||||||||||||||| |
|
|
| T |
18381514 |
ccgttgattctggtttggttccctgctgttctgatccgctcttcttcttcacaggttc |
18381571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 73 - 255
Target Start/End: Original strand, 25505704 - 25505885
Alignment:
| Q |
73 |
agatttacacttgattcgcctttttctctgttcttgcgaaaaagaagatgaagtttgagttttacctgtggttttcttggtgattccgaaccggatcttc |
172 |
Q |
| |
|
|||| ||||||||||||| |||| | |||||||| |||||| ||||||| |||||||||||||||||| |||||||||||| | |||| || |||||| |
|
|
| T |
25505704 |
agatctacacttgattcgtctttgttgatgttcttg-gaaaaaaaagatgaggtttgagttttacctgtgattttcttggtgaattcgaaacgaatcttc |
25505802 |
T |
|
| Q |
173 |
aggaaaacttgaatttaatcttgttccgttgattctggcttggtttcttgctgttccgatcctctcttcttcttcacaggttc |
255 |
Q |
| |
|
|||||||||||| || |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25505803 |
aggaaaacttgagttgaatcttgttctgttgattctggcttgagttcttgctgttccgatcctctcttcttcttcacaggttc |
25505885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 145 - 255
Target Start/End: Original strand, 20581483 - 20581593
Alignment:
| Q |
145 |
tttcttggtgattccgaaccggatcttcaggaaaacttgaatttaatcttgttccgttgattctggcttggtttcttgctgttccgatcctctcttcttc |
244 |
Q |
| |
|
|||||||| |||| ||||||| ||||||||||||||||||||| | |||||||| ||||||| ||||||| ||||||||||| ||||| | |||||||| |
|
|
| T |
20581483 |
tttcttggcgatttcgaaccgaatcttcaggaaaacttgaattgattcttgttctgttgattttggcttgagttcttgctgtttcgatcttttcttcttc |
20581582 |
T |
|
| Q |
245 |
ttcacaggttc |
255 |
Q |
| |
|
|||||||||| |
|
|
| T |
20581583 |
ctcacaggttc |
20581593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 148
Target Start/End: Original strand, 572295 - 572372
Alignment:
| Q |
70 |
tacagatttacacttgattcgcctttttctctgttcttgcgaaaaagaagatgaagtttgagttttacctgtggttttc |
148 |
Q |
| |
|
||||||| |||||||||||||||||| | ||||||||||||| | |||||||| ||||||||||||||||| ||||| |
|
|
| T |
572295 |
tacagatctacacttgattcgcctttgttgatgttcttgcgaaaga-aagatgaattttgagttttacctgtgattttc |
572372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 148
Target Start/End: Original strand, 35872932 - 35873009
Alignment:
| Q |
70 |
tacagatttacacttgattcgcctttttctctgttcttgcgaaaaagaagatgaagtttgagttttacctgtggttttc |
148 |
Q |
| |
|
||||||| |||||||||||||||||| | |||||||| |||| | |||||||||||||||||||||||||| ||||| |
|
|
| T |
35872932 |
tacagatctacacttgattcgcctttgttgatgttcttgagaaaga-aagatgaagtttgagttttacctgtgattttc |
35873009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 148
Target Start/End: Original strand, 34494971 - 34495045
Alignment:
| Q |
73 |
agatttacacttgattcgcctttttctctgttcttgcgaaaaagaagatgaagtttgagttttacctgtggttttc |
148 |
Q |
| |
|
|||| |||||||||||||||||| | |||||||| |||| | |||||||||||||||||||||||||| ||||| |
|
|
| T |
34494971 |
agatctacacttgattcgcctttgttgatgttcttgagaaaga-aagatgaagtttgagttttacctgtgattttc |
34495045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 148
Target Start/End: Original strand, 22273932 - 22274006
Alignment:
| Q |
73 |
agatttacacttgattcgcctttttctctgttcttgcgaaaaagaagatgaagtttgagttttacctgtggttttc |
148 |
Q |
| |
|
|||| ||||||||||||| |||| | |||||||| |||| | |||||||||||||||||||||||||| ||||| |
|
|
| T |
22273932 |
agatctacacttgattcgtctttgttgatgttcttgagaaaga-aagatgaagtttgagttttacctgtgattttc |
22274006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 7 - 255
Target Start/End: Complemental strand, 5244932 - 5244683
Alignment:
| Q |
7 |
cggttttgaatgaagtttttctttt-gttctttgtgctttttcggttacatgcttctataatcttacagatttacacttgattcgcctttttctctgttc |
105 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5244932 |
cggttttgaatgaagttttttttttagttctttgtgctttttcggttacacgcttctataatcctacagatttacacttgattcgcctttttctctgttc |
5244833 |
T |
|
| Q |
106 |
ttgcgaaaaagaagatgaagtttgagttttacctgtggttttcttggtgattccgaaccggatcttcaggaaaacttgaatttaatcttgttccgttgat |
205 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| |||| |||| |||||| |
|
|
| T |
5244832 |
ttgcgaaaaaaaagatgaagtttgagttttacctgtgattttcttggtgatttcgaaccggatcttcaggaaaacttgagtttgatctcgttctgttgat |
5244733 |
T |
|
| Q |
206 |
tctggcttggtttcttgctgttccgatcctctcttcttcttcacaggttc |
255 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5244732 |
tctggcttgatttcttgctgttccgatcctctcttcttctttacaggttc |
5244683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 26751139 - 26751393
Alignment:
| Q |
1 |
aagttacggttttgaatgaagtttttcttttgttctttgtgctttttcggttacatgcttctataatcttacagatttacacttgattcgcctttttc-t |
99 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||| |||||| ||||| || |||| |||||||||||||||||||| ||||||| | |
|
|
| T |
26751139 |
aagttgcggttttgaatgaagtttttcttt-gttctttgtgcttttttggttacgtgcttttagaatcctacagatttacacttgattctccttttttat |
26751237 |
T |
|
| Q |
100 |
ctgttcttgcgaaaaagaagatgaagtttgagttttacctgtggttttcttggtgattccgaaccggatcttca-ggaaaacttgaatttaatcttgttc |
198 |
Q |
| |
|
|| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
26751238 |
ctattcttgcgaaaaa-aaggtgaagtttgagttttacctgtggttttcttggtgattccgaaccggatcttcaaggaaaacttgattttaatcttgttc |
26751336 |
T |
|
| Q |
199 |
cgttgattctggcttggtttcttgctgttccgatcctctcttcttcttcacaggttc |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26751337 |
cgttgattctggcttggtttcttgctgttccgatcctctcttcttcttcacaggttc |
26751393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 11415794 - 11416050
Alignment:
| Q |
1 |
aagttacggttttgaatgaagtttttcttttgttctttgtgctttttcggttacatgcttctataatcttacagatttacacttgattcgcctttttc-t |
99 |
Q |
| |
|
||||| |||||||||||||||||| ||||| |||||||||||||||| |||||| |||||||| |||| |||||||||||||||||||| ||||||| | |
|
|
| T |
11415794 |
aagttgcggttttgaatgaagtttctcttt-gttctttgtgcttttttggttacgtgcttctagaatcctacagatttacacttgattctccttttttat |
11415892 |
T |
|
| Q |
100 |
ctgttcttgcgaaaaagaa-gatgaagtttgagttttacctgtggttttcttggtgattccgaaccggatcttca-ggaaaacttgaatttaatcttgtt |
197 |
Q |
| |
|
|||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||| |
|
|
| T |
11415893 |
ctgttcttgcgaaaaaaaaaggtgaagtttgagttttacctgtggttttcttggtgattccgaaccggatcttcaaggaaagcttgattttaatcttgtt |
11415992 |
T |
|
| Q |
198 |
ccgttgattctggcttggtttcttgctgttccgatcctctcttcttcttcacaggttc |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11415993 |
ccgttgattctggcttggtttcttgctgttccgatcctctcttcttcttcacaggttc |
11416050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 11430798 - 11431053
Alignment:
| Q |
1 |
aagttacggttttgaatgaagtttttcttttgttctttgtgctttttcggttacatgcttctataatcttacagatttacacttgattcgcctttttc-t |
99 |
Q |
| |
|
||||| |||||||||||||||||| ||||| |||||||||| ||||| |||||| |||||||| |||| |||||||||||||||||||| ||||||| | |
|
|
| T |
11430798 |
aagttgcggttttgaatgaagtttctcttt-gttctttgtgattttttggttacgtgcttctagaatcctacagatttacacttgattctccttttttat |
11430896 |
T |
|
| Q |
100 |
ctgttcttgcgaaaaagaagatgaagtttgagttttacctgtggttttcttggtgattccgaaccggatcttca-ggaaaacttgaatttaatcttgttc |
198 |
Q |
| |
|
||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||| |
|
|
| T |
11430897 |
ctgttcttgcggaaaaaaaggtgaagtttgagttttacctgtggttttcttggtgattccgaaccggatcttcaaggaaagcttgattttaatcttgttc |
11430996 |
T |
|
| Q |
199 |
cgttgattctggcttggtttcttgctgttccgatcctctcttcttcttcacaggttc |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11430997 |
cgttgattctggcttggtttcttgctgttccgatcctctcttcttcttcacaggttc |
11431053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 73 - 255
Target Start/End: Original strand, 18460921 - 18461102
Alignment:
| Q |
73 |
agatttacacttgattcgcctttttctctgttcttgcgaaaaagaagatgaagtttgagttttacctgtggttttcttggtgattccgaaccggatcttc |
172 |
Q |
| |
|
|||| ||||||||||||| |||| | ||||||| |||||| ||||||| |||||||||||||||||| |||||||||||||| || | || |||||| |
|
|
| T |
18460921 |
agatctacacttgattcgtctttgttgacgttcttg-gaaaaaaaagatgaggtttgagttttacctgtgattttcttggtgatttcgtaacgaatcttc |
18461019 |
T |
|
| Q |
173 |
aggaaaacttgaatttaatcttgttccgttgattctggcttggtttcttgctgttccgatcctctcttcttcttcacaggttc |
255 |
Q |
| |
|
|||||||||||| || ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18461020 |
aggaaaacttgagttgaatcttgttatgttgattctggcttgagttcttgctgttccgatcctctcttcttcttcacaggttc |
18461102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 148
Target Start/End: Original strand, 23005946 - 23006054
Alignment:
| Q |
40 |
tgctttttcggttacatgcttctataatcttacagatttacacttgattcgcctttttct-ctgttcttgcgaaaaagaagatgaagtttgagttttacc |
138 |
Q |
| |
|
|||||||||||||| | |||||| ||| ||| ||| |||||||||||||||||||||| |||||||| |||| | |||||||||||||||||||||| |
|
|
| T |
23005946 |
tgctttttcggttagaaacttctaaaattctacggatctacacttgattcgcctttttctgatgttcttgagaaaga-aagatgaagtttgagttttacc |
23006044 |
T |
|
| Q |
139 |
tgtggttttc |
148 |
Q |
| |
|
|||| ||||| |
|
|
| T |
23006045 |
tgtgattttc |
23006054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 4053987 - 4053912
Alignment:
| Q |
73 |
agatttacacttgattcgcctttttctctgttcttgcgaaaaagaagatgaagtttgagttttacctgtggttttc |
148 |
Q |
| |
|
|||| ||||||||||||| |||| | |||||||| ||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
4053987 |
agatctacacttgattcgtctttgttgatgttcttgagaaaagaaagatgaagtttgagttttacctgtgattttc |
4053912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 15478194 - 15478120
Alignment:
| Q |
73 |
agatttacacttgattcgcctttttctctgttcttgcgaaaaagaagatgaagtttgagttttacctgtggttttc |
148 |
Q |
| |
|
|||| ||||||||||||| |||| | |||||||| |||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
15478194 |
agatctacacttgattcgtctttgttgatgttcttgagaaaaa-aagatgaagtttgagttttacctgtgattttc |
15478120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 15852953 - 15852879
Alignment:
| Q |
73 |
agatttacacttgattcgcctttttctctgttcttgcgaaaaagaagatgaagtttgagttttacctgtggttttc |
148 |
Q |
| |
|
|||| ||||||||||||| |||| | |||||||| |||| | |||||||||||||||||||||||||| ||||| |
|
|
| T |
15852953 |
agatctacacttgattcgtctttgttgatgttcttgagaaaga-aagatgaagtttgagttttacctgtgattttc |
15852879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 148
Target Start/End: Complemental strand, 4946973 - 4946896
Alignment:
| Q |
70 |
tacagatttacacttgattcgcctttttctctgttcttgcgaaaaagaagatgaagtttgagttttacctgtggttttc |
148 |
Q |
| |
|
||||||| | |||||||||||||||| | |||||||| | || | |||||||||||||||||||||||||| ||||| |
|
|
| T |
4946973 |
tacagatctgcacttgattcgcctttgttgatgttcttgagcaaga-aagatgaagtttgagttttacctgtgattttc |
4946896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 24043983 - 24043729
Alignment:
| Q |
1 |
aagttacggttttgaatgaagtttttcttttgttctttgtgcttttt-cggttacatgcttctataatcttacagatttacacttgattcgcctttttct |
99 |
Q |
| |
|
||||| |||||||||||||||||||| | |||||||||||||||| |||||| | ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
24043983 |
aagttgcggttttgaatgaagttttt-tcaagttctttgtgcttttttcggttaaaaacttctataatcctacagatttacacttgattcgcctttttct |
24043885 |
T |
|
| Q |
100 |
ctgttcttgcgaaaaagaagatgaagtttgagttttacctgtggttttcttggtgattccgaaccggatcttcaggaaaacttgaatttaatcttgttcc |
199 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24043884 |
ttgttcttgagaaaaaaaagatgaagtttgagttttacttgtggttttcttggtgattccgaaccggatcttcaggaaaacttgagtttaatcttgttct |
24043785 |
T |
|
| Q |
200 |
gttgattctggcttggtttcttgctgttccgatcctctcttcttcttcacaggttc |
255 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24043784 |
gttgattctggcttgatttcttgctgttccgatcctctcttcttcttcacaggttc |
24043729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 26267155 - 26267408
Alignment:
| Q |
1 |
aagttacggttttgaatgaagtttttcttttgttctttgtgctttttcggttacatgcttctataatcttacagatttacacttgattcgcctttttctc |
100 |
Q |
| |
|
||||| ||||||||||||||| |||| | ||||||| |||||||||||||| | |||||| |||| ||||||| |||||||||||||||||||| | |
|
|
| T |
26267155 |
aagttgcggttttgaatgaagctttt-tcaagttctttttgctttttcggttataaacttctaaaatcctacagatctacacttgattcgcctttttttt |
26267253 |
T |
|
| Q |
101 |
-tgttcttgcgaaaaagaagatgaagtttgagttttacctgtggttttcttggtgattccgaaccggatcttcaggaaaacttgaatttaatcttgttcc |
199 |
Q |
| |
|
|||||||| |||| | |||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||| ||||||| | ||| |||| |
|
|
| T |
26267254 |
atgttcttgagaaaga-aagatgaagtttgagttttacctgtgattttcttggtgatttcgaaccgaatcttcaggaaaatttgaattaattctcgttct |
26267352 |
T |
|
| Q |
200 |
gttgattctggcttggtttcttgctgttccgatcctctcttcttcttcacaggttc |
255 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
26267353 |
gttgattctggcttgagttcttgctgttccgatcctctcttctttctcacaggttc |
26267408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 147
Target Start/End: Original strand, 15714919 - 15714996
Alignment:
| Q |
70 |
tacagatttacacttgattcgcctttttctctgttcttgcgaaaaagaagatgaagtttgagttttacctgtggtttt |
147 |
Q |
| |
|
||||||| |||||||||||||||||| | |||||||| ||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
15714919 |
tacagatctacacttgattcgcctttgttgatgttcttgaaaaaaaaaagatgaagtttgagttttacctgtgatttt |
15714996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 40561776 - 40561521
Alignment:
| Q |
1 |
aagttacggttttgaatgaagtttttcttttgttctttgtgcttttt-cggttacatgcttctataatcttacagatttacacttgattcgcctttttct |
99 |
Q |
| |
|
||||| ||||||||||||||| |||| | |||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
40561776 |
aagttgcggttttgaatgaagctttt-tcaagttctttgtgcttttttcggttaaaagcttctataatcctacagatttacacttgattcgcctttttct |
40561678 |
T |
|
| Q |
100 |
ctgttcttgc-gaaaaagaagatgaagtttgagttttacctgtggttttcttggtgattccgaaccggatcttcaggaaaacttgaatttaatcttgttc |
198 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40561677 |
ttgttcttgaagaaaaaaaagatgaagtttgagttttacctgtggttttcttggtgattccgaaccggatcttcaggaaaacttgagtttaatcttgttc |
40561578 |
T |
|
| Q |
199 |
cgttgattctggcttggtttcttgctgttccgatcctctcttcttcttcacaggttc |
255 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40561577 |
tattgattttggcttgatttcttgctgttccgatcctctcttcttcttcacaggttc |
40561521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 186
Target Start/End: Complemental strand, 5315910 - 5315794
Alignment:
| Q |
70 |
tacagatttacacttgattcgcctttttctctgttcttgcgaaaaagaagatgaagtttgagttttacctgtggtttt-cttggtgattccgaaccggat |
168 |
Q |
| |
|
||||||| |||||||||||||||||| | |||||||| ||||| |||||||||||||||||||||||||| |||| |||| |||| ||||| ||| |
|
|
| T |
5315910 |
tacagatctacacttgattcgcctttgttgatgttcttgaaaaaaaaaagatgaagtttgagttttacctgtgattttggttggagatttcgaacgagat |
5315811 |
T |
|
| Q |
169 |
cttcaggaaaacttgaat |
186 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
5315810 |
cttc-ggaaaacttgaat |
5315794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 148
Target Start/End: Original strand, 22728918 - 22728992
Alignment:
| Q |
73 |
agatttacacttgattcgcctttttctctgttcttgcgaaaaagaagatgaagtttgagttttacctgtggttttc |
148 |
Q |
| |
|
|||| |||||||||||| ||||| | |||||||| |||| | |||||||||||||||||||||||||| ||||| |
|
|
| T |
22728918 |
agatctacacttgattcacctttgttgatgttcttgagaaaga-aagatgaagtttgagttttacctgtgattttc |
22728992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 157
Target Start/End: Complemental strand, 1894548 - 1894465
Alignment:
| Q |
73 |
agatttacacttgattcgcctttttctctgttcttgcgaaaaagaagatgaagtttgagttttacctgtggttttcttggtgatt |
157 |
Q |
| |
|
|||| ||||||||||||| |||| | |||||||| |||| | |||||||||||||||||||||||| | ||| ||||| |||| |
|
|
| T |
1894548 |
agatctacacttgattcgtctttgttgatgttcttgagaaaga-aagatgaagtttgagttttacctgagttttgcttggagatt |
1894465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 9 - 255
Target Start/End: Complemental strand, 28261640 - 28261393
Alignment:
| Q |
9 |
gttttgaatgaagtttttcttttgttctttgtgctttttcggttacatgcttctataatcttacagatttacacttgattcgcctttttc-tctgttctt |
107 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| || ||| |||||||| |||| |||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
28261640 |
gttttgaatgaagtttttcttt-gttctttgtgcttttt-ggctacgtgcttctagaatcctacagatttacacttgattctccttttttatctgttctt |
28261543 |
T |
|
| Q |
108 |
gcgaaaaagaa-gatgaagtttgagttttacctgtggttttcttggtgattccgaaccggatcttca-ggaaaacttgaatttaatcttgttccgttgat |
205 |
Q |
| |
|
|||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| |
|
|
| T |
28261542 |
gcgaaaaaaaaaggtgaagtttgagttttacctgtggttttcttggtgattccgaaccggatcttcaaggaaagcttgattttaatcttgttccgttgat |
28261443 |
T |
|
| Q |
206 |
tctggcttggtttcttgctgttccgatcctctcttcttcttcacaggttc |
255 |
Q |
| |
|
||||| |||||| | |||||||| ||||| |||||||||||||||||||| |
|
|
| T |
28261442 |
tctggtttggttccctgctgttctgatccgctcttcttcttcacaggttc |
28261393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 5564887 - 5565138
Alignment:
| Q |
1 |
aagttacggttttgaatgaagtttttcttttgttctttgtgctttttcggttacatgcttctataatcttacagatttacacttgattcgcctttttctc |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||| || ||| |||||||| |||| |||| |||| ||||||||| ||||||| || |
|
|
| T |
5564887 |
aagttgcggttttgaatgaagtttttcttt-gttctttgtgcttttt-ggctacgtgcttctagaatcctacatgtttatacttgattctcctttttatc |
5564984 |
T |
|
| Q |
101 |
tgttctt-gcgaaaaagaagatgaagtttgagttttacctgtggttttcttggtgattccgaaccggatcttca-ggaaaacttgaatttaatcttgttc |
198 |
Q |
| |
|
|| || |||||||| ||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||| ||||| |||| |||||||| |
|
|
| T |
5564985 |
cattttttgcgaaaaa-aag--gaagtttgagttttacctgtggttttcttggtggttccgatccggatcttcaaggaaagcttgattttagtcttgttc |
5565081 |
T |
|
| Q |
199 |
cgttgattctggcttggtttcttgctgttccgatcctctcttcttcttcacaggttc |
255 |
Q |
| |
|
|||||||||||| |||||| | |||||||| ||||| |||||||||||||||||||| |
|
|
| T |
5565082 |
cgttgattctggtttggttccctgctgttctgatccgctcttcttcttcacaggttc |
5565138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 73 - 255
Target Start/End: Original strand, 19651774 - 19651957
Alignment:
| Q |
73 |
agatttacacttgattcgcctttttctctgttcttgcgaaaaagaagatgaagtttgagttttacctgtggttttcttggtgattccgaaccggatcttc |
172 |
Q |
| |
|
|||| ||||||||||||| |||| | | |||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| |||||| |
|
|
| T |
19651774 |
agatctacacttgattcgtctttgttgatattcttggaaaaaaaaagatgaagtttgagttttacctgtgattttcttggtgatttcgaaccgaatcttc |
19651873 |
T |
|
| Q |
173 |
-aggaaaacttgaatttaatcttgttccgttgattctggcttggtttcttgctgttccgatcctctcttcttcttcacaggttc |
255 |
Q |
| |
|
|| |||||||| ||| | |||||||| ||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
19651874 |
aagaaaaacttggattgattcttgttctgttgattctggcttgagttcttgctgttccgatcctcttttctttttcacaggttc |
19651957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 101 - 197
Target Start/End: Original strand, 24462722 - 24462817
Alignment:
| Q |
101 |
tgttcttgcgaaaaagaagatgaagtttgagttttacctgtggttttcttggtgattccgaaccggatcttcaggaaaacttgaatttaatcttgtt |
197 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||| ||| | ||||||| |
|
|
| T |
24462722 |
tgttcttggaaaaaaga-gatgaagtttgagttttacctgtgattttcttggtgatttcgaaccgaatcttcaggaaaacttggattgattcttgtt |
24462817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 148
Target Start/End: Original strand, 12481463 - 12481570
Alignment:
| Q |
40 |
tgctttttcggttacatgcttctataatcttacagatttacacttgattcgcctttttctctgttcttgcgaaaaagaagatgaagtttgagttttacct |
139 |
Q |
| |
|
|||||||||||||| | |||||| ||| ||||||| |||||||||||||||||| | |||||||| |||| | ||||||||||||||||||||||| |
|
|
| T |
12481463 |
tgctttttcggttagaaacttctaaaattctacagatatacacttgattcgcctttgttgatgttcttgagaaaga-aagatgaagtttgagttttacct |
12481561 |
T |
|
| Q |
140 |
gtggttttc |
148 |
Q |
| |
|
||| ||||| |
|
|
| T |
12481562 |
gtgattttc |
12481570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 4337566 - 4337820
Alignment:
| Q |
1 |
aagttacggttttgaatgaagtttttcttttgttctttgtgctttttcggttacatgcttctataatcttacagatttacacttgattcgcctttttctc |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||| || ||| |||||||| |||| |||| |||| ||||||||| ||||||| || |
|
|
| T |
4337566 |
aagttgcggttttgaatgaagtttttcttt-gttctttgtgcttttt-ggctacgtgcttctagaatcctacatgtttatacttgattctcctttttatc |
4337663 |
T |
|
| Q |
101 |
tgttctt-gcgaaaaagaagatgaagtttgagttttacctgtggttttcttggtgattccgaaccggatcttca-ggaaaacttgaatttaatcttgttc |
198 |
Q |
| |
|
|| || |||||||| || | ||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||| ||||| |||| |||||||| |
|
|
| T |
4337664 |
cattttttgcgaaaaaaaaaaggaagtttgagttttacctgtggttttcttggtggttccgatccggatcttcaaggaaagcttgattttagtcttgttc |
4337763 |
T |
|
| Q |
199 |
cgttgattctggcttggtttcttgctgttccgatcctctcttcttcttcacaggttc |
255 |
Q |
| |
|
|||||||||||| |||||| | |||||||| ||||| |||||||||||||||||||| |
|
|
| T |
4337764 |
cgttgattctggtttggttccctgctgttctgatccgctcttcttcttcacaggttc |
4337820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 4352706 - 4352961
Alignment:
| Q |
1 |
aagttacggttttgaatgaagtttttcttttgttctttgtgctttttcggttacatgcttctataatcttacagatttacacttgattcgcctttttctc |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||| || ||| |||||||| |||| |||| |||| ||||||||| ||||||| || |
|
|
| T |
4352706 |
aagttgcggttttgaatgaagtttttcttt-gttctttgtgcttttt-ggctacgtgcttctagaatcctacatgtttatacttgattctcctttttatc |
4352803 |
T |
|
| Q |
101 |
tgttctt-gcgaaaaagaagatg-aagtttgagttttacctgtggttttcttggtgattccgaaccggatcttca-ggaaaacttgaatttaatcttgtt |
197 |
Q |
| |
|
|| || |||||||| || | | |||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||| ||||| |||| ||||||| |
|
|
| T |
4352804 |
cattttttgcgaaaaaaaaaaaggaagtttgagttttacctgtggttttcttggtggttccgatccggatcttcaaggaaagcttgattttagtcttgtt |
4352903 |
T |
|
| Q |
198 |
ccgttgattctggcttggtttcttgctgttccgatcctctcttcttcttcacaggttc |
255 |
Q |
| |
|
||||||||||||| |||||| | |||||||| ||||| |||||||||||||||||||| |
|
|
| T |
4352904 |
ccgttgattctggtttggttccctgctgttctgatccgctcttcttcttcacaggttc |
4352961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 28364348 - 28364599
Alignment:
| Q |
1 |
aagttacggttttgaatgaagtttttcttttgttctttgtgctttttcggttacatgcttctataatcttacagatttacacttgattcgcctttttctc |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||||||||||||| || ||| |||||||| |||| |||| |||| ||||||||| ||||||| || |
|
|
| T |
28364348 |
aagttgcggttttgaatgaagtttttcttt-gttctttgtgcttttt-ggctacgtgcttctagaatcctacatgtttatacttgattctcctttttatc |
28364445 |
T |
|
| Q |
101 |
tgttctt-gcgaaaaagaagatgaagtttgagttttacctgtggttttcttggtgattccgaaccggatcttca-ggaaaacttgaatttaatcttgttc |
198 |
Q |
| |
|
|| || |||||||| ||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||| ||||| |||| |||||||| |
|
|
| T |
28364446 |
cattttttgcgaaaaa-aag--gaagtttgagttttacctgtggttttcttggtggttccgatccggatcttcaaggaaagcttgattttagtcttgttc |
28364542 |
T |
|
| Q |
199 |
cgttgattctggcttggtttcttgctgttccgatcctctcttcttcttcacaggttc |
255 |
Q |
| |
|
|||||||||||| |||||| | |||||||| ||||| |||||||||||||||||||| |
|
|
| T |
28364543 |
cgttgattctggtttggttccctgctgttctgatccgctcttcttcttcacaggttc |
28364599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 73 - 255
Target Start/End: Original strand, 16420739 - 16420920
Alignment:
| Q |
73 |
agatttacacttgattcgcctttttctctgttcttgcgaaaaagaagatgaagtttgagttttacctgtggttttcttggtgattccgaaccggatcttc |
172 |
Q |
| |
|
|||| ||||||||||||| |||| | |||||||| |||||| ||||||| |||||||||||||||||| |||||||||||||| ||||||| |||||| |
|
|
| T |
16420739 |
agatctacacttgattcgtctttgttgatgttcttg-gaaaaaaaagatgaggtttgagttttacctgtgattttcttggtgatttcgaaccgaatcttc |
16420837 |
T |
|
| Q |
173 |
aggaaaacttgaatttaatcttgttccgttgattctggcttggtttcttgctgttccgatcctctcttcttcttcacaggttc |
255 |
Q |
| |
|
| |||||||||| || |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16420838 |
aagaaaacttgagttgaatcttgttctgttgattctggcttgagttcttgctgttccgatcctctcttcttcttcacaggttc |
16420920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 186
Target Start/End: Original strand, 32965565 - 32965681
Alignment:
| Q |
70 |
tacagatttacacttgattcgcctttttctctgttcttgcgaaaaagaagatgaagtttgagttttacctgtggtttt-cttggtgattccgaaccggat |
168 |
Q |
| |
|
||||||| |||||||||||||||||| | ||||||| ||||| |||||||||||||||||||||||||| |||| |||| |||| ||||| ||| |
|
|
| T |
32965565 |
tacagatctacacttgattcgcctttgttgatgttcttaaaaaaaaaaagatgaagtttgagttttacctgtgattttggttggagatttcgaacgagat |
32965664 |
T |
|
| Q |
169 |
cttcaggaaaacttgaat |
186 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
32965665 |
cttc-ggaaaacttgaat |
32965681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 19446239 - 19446164
Alignment:
| Q |
73 |
agatttacacttgattcgcctttttctctgttcttgcgaaaaagaagatgaagtttgagttttacctgtggttttc |
148 |
Q |
| |
|
|||| ||||||||||||| |||| | |||||||| |||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
19446239 |
agatctacacttgattcgtctttgttgatgttcttgagaaaaaaaagatgaagtttgagttttacctgtgattttc |
19446164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 19448064 - 19447989
Alignment:
| Q |
73 |
agatttacacttgattcgcctttttctctgttcttgcgaaaaagaagatgaagtttgagttttacctgtggttttc |
148 |
Q |
| |
|
|||| ||||||||||||| |||| | |||||||| |||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
19448064 |
agatctacacttgattcgtctttgttgatgttcttgagaaaaaaaagatgaagtttgagttttacctgtgattttc |
19447989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 148
Target Start/End: Original strand, 26827400 - 26827475
Alignment:
| Q |
73 |
agatttacacttgattcgcctttttctctgttcttgcgaaaaagaagatgaagtttgagttttacctgtggttttc |
148 |
Q |
| |
|
|||| ||||||||||||| |||| | |||||||| |||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
26827400 |
agatctacacttgattcgtctttgttgatgttcttgagaaaaaaaagatgaagtttgagttttacctgtgattttc |
26827475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 36132660 - 36132699
Alignment:
| Q |
100 |
ctgttcttgcgaaaaagaagatgaagtttgagttttacctg |
140 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
36132660 |
ctgttcttgagaaaaa-aagatgaagtttgagttttacctg |
36132699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 20322811 - 20322986
Alignment:
| Q |
1 |
aagttacggttttgaatgaagtttttcttttgttctttgtgcttttt-cggttacatgcttctataatcttacagatttacacttgattcgcctttttct |
99 |
Q |
| |
|
||||| |||||||||||||||||||| | |||||||||||||||| |||||| | ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
20322811 |
aagttgcggttttgaatgaagttttt-tcaagttctttgtgcttttttcggttaaaaacttctataatcctacagatttacacttgattcgcctttttct |
20322909 |
T |
|
| Q |
100 |
ctgttcttgcgaaaaagaagatgaagtttgagttttacctgtggttttcttggtgattccgaaccggatcttcaggaaa |
178 |
Q |
| |
|
|||||| | |||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
20322910 |
ttgttctcgagaaaaa--agatgaagtttgagttttacctgtggttttcttggtgatttcgaaccggatcttcaggaaa |
20322986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 148
Target Start/End: Original strand, 13482581 - 13482655
Alignment:
| Q |
73 |
agatttacacttgattcgcctttttctctgttcttgcgaaaaagaagatgaagtttgagttttacctgtggttttc |
148 |
Q |
| |
|
|||| |||||||||||||||||| | |||||||| |||| | |||||||||||||||||||||||||| ||||| |
|
|
| T |
13482581 |
agatctacacttgattcgcctttgttgatgttcttgagaaaga-aagatgaagtttgagttttacctgtgattttc |
13482655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 148
Target Start/End: Original strand, 21646640 - 21646714
Alignment:
| Q |
73 |
agatttacacttgattcgcctttttctctgttcttgcgaaaaagaagatgaagtttgagttttacctgtggttttc |
148 |
Q |
| |
|
|||| |||||||||||| ||||| | |||||||| |||| | |||||||||||||||||||||||||| ||||| |
|
|
| T |
21646640 |
agatctacacttgattcacctttgttgatgttcttgagaaaga-aagatgaagtttgagttttacctgtgattttc |
21646714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 47664269 - 47664338
Alignment:
| Q |
70 |
tacagatttacacttgattcgcctttttctctgttcttgcgaaaaagaagatgaagtttgagttttacctg |
140 |
Q |
| |
|
||||||| |||||||||||||||||| | |||||||| |||| | |||||||| ||||||||||||||| |
|
|
| T |
47664269 |
tacagatctacacttgattcgcctttgttgatgttcttgagaaaga-aagatgaaatttgagttttacctg |
47664338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 101 - 214
Target Start/End: Original strand, 33341 - 33453
Alignment:
| Q |
101 |
tgttcttgcgaaaaagaagatgaagtttgagttttacctgtggttttcttggtgattccgaaccggatcttcaggaaaacttgaatttaatcttgttccg |
200 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||| ||| | |||||||| | |
|
|
| T |
33341 |
tgttcttggaaaaaaga-gatgaagtttgagttttacctgtgattttcttggtgatttcgaaccgaatcttcaggaaaacttggattgattcttgttctg |
33439 |
T |
|
| Q |
201 |
ttgattctggcttg |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
33440 |
ttgattctggcttg |
33453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 101 - 214
Target Start/End: Complemental strand, 165450 - 165338
Alignment:
| Q |
101 |
tgttcttgcgaaaaagaagatgaagtttgagttttacctgtggttttcttggtgattccgaaccggatcttcaggaaaacttgaatttaatcttgttccg |
200 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||| ||| | |||||||| | |
|
|
| T |
165450 |
tgttcttggaaaaaaga-gatgaagtttgagttttacctgtgattttcttggtgatttcgaaccgaatcttcaggaaaacttggattgattcttgttctg |
165352 |
T |
|
| Q |
201 |
ttgattctggcttg |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
165351 |
ttgattctggcttg |
165338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1376 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold1376
Description:
Target: scaffold1376; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 40 - 148
Target Start/End: Complemental strand, 870 - 763
Alignment:
| Q |
40 |
tgctttttcggttacatgcttctataatcttacagatttacacttgattcgcctttttctctgttcttgcgaaaaagaagatgaagtttgagttttacct |
139 |
Q |
| |
|
|||||||||||||| | |||||| ||| ||||||| |||||||||||||||||| | |||||||| |||| | ||||||||||||||||||||||| |
|
|
| T |
870 |
tgctttttcggttagaaacttctaaaattctacagatatacacttgattcgcctttgttgatgttcttgagaaaga-aagatgaagtttgagttttacct |
772 |
T |
|
| Q |
140 |
gtggttttc |
148 |
Q |
| |
|
||| ||||| |
|
|
| T |
771 |
gtgattttc |
763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0354 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0354
Description:
Target: scaffold0354; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 1793 - 1718
Alignment:
| Q |
73 |
agatttacacttgattcgcctttttctctgttcttgcgaaaaagaagatgaagtttgagttttacctgtggttttc |
148 |
Q |
| |
|
|||| ||||||||||||| |||| | |||||||| |||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
1793 |
agatctacacttgattcgtctttgttgatgttcttgagaaaaaaaagatgaagtttgagttttacctgtgattttc |
1718 |
T |
|
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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 70 - 148
Target Start/End: Original strand, 18816441 - 18816518
Alignment:
| Q |
70 |
tacagatttacacttgattcgcctttttctctgttcttgcgaaaaagaagatgaagtttgagttttacctgtggttttc |
148 |
Q |
| |
|
||||||| |||||||||||||||||| | ||||||||||||| | |||||||| ||||||||||||||||| ||||| |
|
|
| T |
18816441 |
tacagatctacacttgattcgcctttgttgatgttcttgcgaaaga-aagatgaattttgagttttacctgtgattttc |
18816518 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 186
Target Start/End: Complemental strand, 29626848 - 29626735
Alignment:
| Q |
73 |
agatttacacttgattcgcctttttctctgttcttgcgaaaaagaagatgaagtttgagttttacctgtggtttt-cttggtgattccgaaccggatctt |
171 |
Q |
| |
|
|||| ||||||||||||| |||| | |||||||| |||||| | |||||||||||||||||||||||| |||| |||| |||| ||||| |||||| |
|
|
| T |
29626848 |
agatctacacttgattcgtctttgttgatgttcttgagaaaaaaaggatgaagtttgagttttacctgtgattttggttggagatttcgaacgagatctt |
29626749 |
T |
|
| Q |
172 |
caggaaaacttgaat |
186 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
29626748 |
c-ggaaaacttgaat |
29626735 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 186
Target Start/End: Original strand, 27294180 - 27294296
Alignment:
| Q |
70 |
tacagatttacacttgattcgcctttttctctgttcttgcgaaaaagaagatgaagtttgagttttacctgtggttttc--ttggtgattccgaaccgga |
167 |
Q |
| |
|
||||||| | |||||||||||||||| | |||||||| | || | |||||||||||||||||||||||||| ||||| |||| |||| ||||| || |
|
|
| T |
27294180 |
tacagatctgcacttgattcgcctttgttgatgttcttgagcaaga-aagatgaagtttgagttttacctgtgattttcggttggagatttcgaacgaga |
27294278 |
T |
|
| Q |
168 |
tcttcaggaaaacttgaat |
186 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
27294279 |
tcttc-ggaaaacttgaat |
27294296 |
T |
|
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