View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708_low_4 (Length: 585)
Name: NF7708_low_4
Description: NF7708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 462; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 1 - 568
Target Start/End: Complemental strand, 5035086 - 5034528
Alignment:
| Q |
1 |
ctacaatatcaatgagcttcaagaaccagttgcagggaaaggagaataaaggctgaacttgcctcaccagtgatgaatgcaagatttcgattaaaacctg |
100 |
Q |
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| T |
5035086 |
ctacaatatcaatgagcttcaagaaccagttgcagggaaaggagaataaaagctgaacttgcctcactagtaatgaatgcaagatttcga---------- |
5034997 |
T |
|
| Q |
101 |
ctacaaaaactaatttgcacaatggaaaccgatttgcagggcacacaataggtctattcgcaagtcatatattttcttgtagaacaaatagtggtattca |
200 |
Q |
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| T |
5034996 |
ctacaaaaactaatttgcacaatggaaaccgatttgcagggcacacaccaggtctattcgcaagtcatatattttcttgtagaacaaataatggtattca |
5034897 |
T |
|
| Q |
201 |
agtaaggattcgggtgcaactgttcacattaggcatccgcacaacattgaattagatgacttgatttttatatagttttggcagaactggaaggaaaatt |
300 |
Q |
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| T |
5034896 |
agtaaggattcgggtgcaactgttcacattaggcatccgcacaacattgaattagatgacttgatttttatttagttttggcagaactggaaggaaaatt |
5034797 |
T |
|
| Q |
301 |
tactacttcagatgatataaggatgttatattcttacttgattttattatcaaacttgtgtctagtagatgttcgtttgttactcaatc-tgttttatgt |
399 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
5034796 |
tactacttcagatgatctaaggatgttatattcttacttgattttattatcaaacttgtgtctagtagatgttcgtttgttactcaatcttcctttatgt |
5034697 |
T |
|
| Q |
400 |
gcttagaatgttaataattattcaaaatcttttaccagttttatgtttaacattcaacacatctttttaatttggttgaatctccgaatatctatttcat |
499 |
Q |
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| T |
5034696 |
gcttagaatgttaataattattcaaagtcttttaccagttttatgtttaacattcaatacatctttttaatttggttgaatctcctgatatctatttcat |
5034597 |
T |
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| Q |
500 |
tcattttgatatgaaattagaaacttctccaagcatggtgaaatagtcattgttcatgacttaacactt |
568 |
Q |
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| T |
5034596 |
tcatattgatgtgaaattagaaacttctccaagcatggtgaaatagtcattgttcatgacttaacactt |
5034528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 25 - 157
Target Start/End: Complemental strand, 2533246 - 2533112
Alignment:
| Q |
25 |
accagttgcagggaaaggagaataaaggctgaacttgcctcaccagtgatgaatgcaagatttcgattaaaacctgctacaaaaactaatttgcacaatg |
124 |
Q |
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| T |
2533246 |
accacttgcagggaatggagaataagagctgaacatgcctcacaagtgatgaatgcaggatttcgattaaaacctgctgcaaaaactaatttgcacaaat |
2533147 |
T |
|
| Q |
125 |
gaaa--ccgatttgcagggcacacaataggtctat |
157 |
Q |
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| T |
2533146 |
gagatgctgatttgcagggcacacaacaggtctat |
2533112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 477 - 554
Target Start/End: Complemental strand, 2489483 - 2489406
Alignment:
| Q |
477 |
gaatctccgaatatctatttcattcattttgatatgaaattagaaacttctccaagcatggtgaaatagtcattgttc |
554 |
Q |
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| T |
2489483 |
gaatctctaaatatctatttcattcattttgattttaaattagaaacttctcgaagcctggtgaaatggtcattgttc |
2489406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 2489630 - 2489582
Alignment:
| Q |
268 |
ttatatagttttggcagaactggaaggaaaatttactacttcagatgat |
316 |
Q |
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| T |
2489630 |
ttataaagttctggcagaacttgaatgaaaatttactacttcagatgat |
2489582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 2489740 - 2489687
Alignment:
| Q |
167 |
atatattttcttgtagaacaaatagtggtattcaagtaaggattcgggtgcaact |
221 |
Q |
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| T |
2489740 |
atatatttt-ttgtagaacaaacagaggtagtcaagtaaggatttgggtgcaact |
2489687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 5095577 - 5095638
Alignment:
| Q |
165 |
tcatatattttcttgtagaacaaatagtggtattcaagtaaggattcgggtgcaactgttca |
226 |
Q |
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| T |
5095577 |
tcatgtattttcttgaagaacaaatagaggtagtcaagtacagattttggtgcaactgttca |
5095638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 321 - 369
Target Start/End: Complemental strand, 2532923 - 2532875
Alignment:
| Q |
321 |
ggatgttatattcttacttgattttattatcaaacttgtgtctagtaga |
369 |
Q |
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| T |
2532923 |
ggatgttctattcttacctgattttaatattaaccttgtgtctagtaga |
2532875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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