View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7708_low_5 (Length: 573)
Name: NF7708_low_5
Description: NF7708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 132; Significance: 3e-68; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 427 - 558
Target Start/End: Complemental strand, 42206768 - 42206637
Alignment:
| Q |
427 |
attgaatgttgttgaataatcaagaaagaagaataggtatcctagcatgtatcaatgtttcgaaacaaaattaccgtagcaaacaaaaacatttatgttt |
526 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42206768 |
attgaatgttgttgaataatcaagaaagaagaataggtatcctagcatgtatcaatgtttcgaaacaaaattaccgtagcaaacaaaaacatttatgttt |
42206669 |
T |
|
| Q |
527 |
cgaaacattagcgtcaactgagcacggttctt |
558 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
42206668 |
cgaaacattagcgtcaactgagcacggttctt |
42206637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 160 - 339
Target Start/End: Complemental strand, 42206965 - 42206780
Alignment:
| Q |
160 |
atgactaaagagttcataatgcatgcagtttactataacgtcattgaggaggcatccatccctaatcccttac-aaatgtttatgaaacgatgtatgtgc |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
42206965 |
atgactaaagagttcataatgcatgcagtttactataacgtcattgaggaggcatccatccctaatcccttacaaaatatttatgaaacgatgtatgtgc |
42206866 |
T |
|
| Q |
259 |
atcaattcctaccctcaaaattga-----tgttacaaaattcagatgaatgtcactgcaagagtttttgatgttacaaaattgaag |
339 |
Q |
| |
|
|||||||||||||||||||||||| | ||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42206865 |
atcaattcctaccctcaaaattgaacgagggacccaacattcagatgaatgtcactgcaagattttttgatgttacaaaattgaag |
42206780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 406 - 451
Target Start/End: Complemental strand, 42207787 - 42207742
Alignment:
| Q |
406 |
tttctttctttcaagcagaagattgaatgttgttgaataatcaaga |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
42207787 |
tttctttctttcaagcagaagattgaatgttcttgaataatcaaga |
42207742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 390
Target Start/End: Complemental strand, 42207989 - 42207933
Alignment:
| Q |
334 |
ttgaagcagaagattgaatgttcctgaataattaagaactagaaaacaggtaaccca |
390 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||| ||||| |||||||||| |
|
|
| T |
42207989 |
ttgaagcagaagattgaatgttcttgaataaccaagaacacgaaaataggtaaccca |
42207933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University