View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7708_low_53 (Length: 227)
Name: NF7708_low_53
Description: NF7708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708_low_53 |
 | |
|
| [»] chr6 (4 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 33909193 - 33908967
Alignment:
| Q |
1 |
attggaattccaccagaaaattgattataacttatatccagaagtgaaatacttgatgacaaattttgaggaagctcaccattgaacttattatgactta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33909193 |
attggaattccaccagaaaattgattataacttatatccaaaagtgaaatacttgatgacaaattttgaggaagctcaccattgaacttattatgactta |
33909094 |
T |
|
| Q |
101 |
tcataaaatacaccagattttcagatctccagagtccactaggaatgttaccgtaaaaatcgttcttgtaaattttcacctccaacaagctactacaatt |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33909093 |
tcataaaataccccagattttcagatctccagagtccactaggaatgttaccgtaaaaatcgttcttgtaaattttcatctccaacaagctactacaatt |
33908994 |
T |
|
| Q |
201 |
tccaagtgattctggtaactcaccact |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
33908993 |
tccaagtgattctggtaactcaccact |
33908967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 33884962 - 33884739
Alignment:
| Q |
1 |
attggaattccaccagaaaattgattataacttatatccagaagtgaaatacttgatgacaaattttgaggaagctcaccattgaacttattatgactta |
100 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||| | || |||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33884962 |
attggaattccaccataaaattgattgtaacttatatcaaaaactgaaatacttgaagacaaattttgaggaatttcaccattgaacttattatgactta |
33884863 |
T |
|
| Q |
101 |
tcataaaatacaccagattttcagatctccagagtccactaggaatgttaccgtaaaaatcgttcttgtaaattttcacctccaacaagctactacaatt |
200 |
Q |
| |
|
|||| ||| ||||| | |||| || |||| |||||||||||||| ||||| |||| || ||||||||||||| || | | | |||| |||||||||| |
|
|
| T |
33884862 |
tcatgaaaatcaccaaa--ttcatat-tccaaagtccactaggaattttaccagaaaattcattcttgtaaatttccagcacaagcaagttactacaatt |
33884766 |
T |
|
| Q |
201 |
tccaagtgattctggtaactcaccact |
227 |
Q |
| |
|
||||| ||||| ||| ||||||||||| |
|
|
| T |
33884765 |
tccaattgattttggcaactcaccact |
33884739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 33896310 - 33896533
Alignment:
| Q |
1 |
attggaattccaccagaaaattgattataacttatatccagaagtgaaatacttgatgacaaattttgaggaagctcaccattgaacttattatgactta |
100 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||| | ||||||||||||||| || || |||||||| | |||||| |||||||||||||||||| |
|
|
| T |
33896310 |
attggaattccaccataaaattgattgtaacttatatcaaaaagtgaaatacttgaagaaaagttttgaggcatttcaccagtgaacttattatgactta |
33896409 |
T |
|
| Q |
101 |
tcataaaatacaccagattttcagatctccagagtccactaggaatgttaccgtaaaaatcgttcttgtaaattttcacctccaacaagctactacaatt |
200 |
Q |
| |
|
| || ||| ||||| | |||| || |||| |||||||||||||| ||||| |||| || ||| || ||||| || | | || | | |||||||||| |
|
|
| T |
33896410 |
taatgaaagtcaccaaa--ttcatat-tccaaagtccactaggaattttaccagaaaattcattccggtcaatttccagcgcaaagaggttactacaatt |
33896506 |
T |
|
| Q |
201 |
tccaagtgattctggtaactcaccact |
227 |
Q |
| |
|
||||| ||||| ||| ||||||||||| |
|
|
| T |
33896507 |
tccaattgattttggcaactcaccact |
33896533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 24792508 - 24792566
Alignment:
| Q |
169 |
taaattttcacctccaacaagctactacaatttccaagtgattctggtaactcaccact |
227 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||| ||||||| |||||| |||||||| |
|
|
| T |
24792508 |
taaattttcaagtccaacaacttactacaatttcctagtgattttggtaattcaccact |
24792566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University