View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7708_low_56 (Length: 219)

Name: NF7708_low_56
Description: NF7708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7708_low_56
NF7708_low_56
[»] chr6 (4 HSPs)
chr6 (30-133)||(4460236-4460339)
chr6 (32-137)||(17993482-17993587)
chr6 (1-29)||(12343153-12343181)
chr6 (1-29)||(13043510-13043538)
[»] chr4 (9 HSPs)
chr4 (30-133)||(53791188-53791291)
chr4 (42-128)||(44769853-44769941)
chr4 (1-29)||(6271755-6271783)
chr4 (1-29)||(23444326-23444354)
chr4 (1-29)||(30861831-30861859)
chr4 (1-29)||(42375063-42375091)
chr4 (1-29)||(47661895-47661923)
chr4 (1-29)||(50384162-50384190)
chr4 (1-29)||(51265498-51265526)
[»] chr3 (6 HSPs)
chr3 (32-128)||(22489734-22489830)
chr3 (133-166)||(1261463-1261496)
chr3 (52-84)||(19884717-19884749)
chr3 (1-29)||(30476531-30476559)
chr3 (1-29)||(33689229-33689257)
chr3 (1-29)||(43139766-43139794)
[»] chr2 (5 HSPs)
chr2 (34-133)||(7395592-7395691)
chr2 (1-29)||(14229410-14229438)
chr2 (1-29)||(16514477-16514505)
chr2 (1-29)||(29508748-29508776)
chr2 (1-29)||(38933640-38933668)
[»] chr1 (11 HSPs)
chr1 (34-133)||(45529506-45529605)
chr1 (1-29)||(741559-741587)
chr1 (1-29)||(5995422-5995450)
chr1 (1-29)||(15220864-15220892)
chr1 (1-29)||(17127621-17127649)
chr1 (1-29)||(29179654-29179682)
chr1 (1-29)||(32540805-32540833)
chr1 (1-29)||(37155099-37155127)
chr1 (1-29)||(44706841-44706869)
chr1 (1-29)||(45728340-45728368)
chr1 (1-29)||(48993974-48994002)
[»] chr8 (7 HSPs)
chr8 (1-30)||(34229693-34229722)
chr8 (1-29)||(5033214-5033242)
chr8 (1-29)||(6296658-6296686)
chr8 (1-29)||(8243445-8243473)
chr8 (1-29)||(33841648-33841676)
chr8 (1-29)||(34541860-34541888)
chr8 (1-29)||(35441026-35441054)
[»] chr7 (2 HSPs)
chr7 (32-77)||(15568864-15568909)
chr7 (1-29)||(38975858-38975886)
[»] scaffold1033 (1 HSPs)
scaffold1033 (1-29)||(2266-2294)
[»] scaffold1029 (1 HSPs)
scaffold1029 (1-29)||(2266-2294)
[»] scaffold0586 (1 HSPs)
scaffold0586 (1-29)||(7104-7132)
[»] chr5 (7 HSPs)
chr5 (1-29)||(2093994-2094022)
chr5 (1-29)||(2953243-2953271)
chr5 (1-29)||(3899892-3899920)
chr5 (1-29)||(16439191-16439219)
chr5 (1-29)||(16971197-16971225)
chr5 (1-29)||(19598385-19598413)
chr5 (1-29)||(29699420-29699448)


Alignment Details
Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 4460339 - 4460236
Alignment:
Q  30 cacgtcccaaggcattttaaacgtgaaaataaagaagctaccttttgtagcttttgtgcaaacggcattttttcctatttctaccggtacaacaaacaca 129  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4460339 cacgtcccaaggcattttgaacgtgaaaataaagaagctaccttttgtagcttttgtgcaaacggcgttttttcctatttctaccggtacaacaaacaca 4460240  T
Q  130 tact 133  Q
    ||||    
T  4460239 tact 4460236  T

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Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 32 - 137
Target Start/End: Original strand, 17993482 - 17993587
Alignment:
Q  32 cgtcccaaggcattttaaacgtgaaaataaagaagctaccttttgtagcttttgtgcaaacggcattttttcctatttctaccggtacaacaaacacata 131  Q
    ||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||| |||| |||||||||||| |     
T  17993482 cgtcccaaggcgttttgaacgtgaaaataaagaagctaccttttgaagcttttgtgcaaacggcgtttttttctatttccaccgctacaacaaacacgtt 17993581  T
Q  132 cttaat 137  Q
    ||||||    
T  17993582 cttaat 17993587  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 12343181 - 12343153
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  12343181 cttgtgaaagagagagaaacacaagcatt 12343153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 13043538 - 13043510
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  13043538 cttgtgaaagagagagaaacacaagcatt 13043510  T

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Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 30 - 133
Target Start/End: Original strand, 53791188 - 53791291
Alignment:
Q  30 cacgtcccaaggcattttaaacgtgaaaataaagaagctaccttttgtagcttttgtgcaaacggcattttttcctatttctaccggtacaacaaacaca 129  Q
    |||||||| ||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||| ||||  |||||||||||     
T  53791188 cacgtcccgaggcattttgaaagtgaaaataaagaagctaccatttgtagcttttgtgcaaacggcgtttttttctatttccaccgccacaacaaacacg 53791287  T
Q  130 tact 133  Q
    ||||    
T  53791288 tact 53791291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 128
Target Start/End: Complemental strand, 44769941 - 44769853
Alignment:
Q  42 cattttaaacgtgaaaataaagaagctaccttttgtagcttttgtgcaaacg--gcattttttcctatttctaccggtacaacaaacac 128  Q
    |||||| |||||||||||||||||| ||||||||||||||||||| ||||||  |  |||||| ||||||| |||| ||||||||||||    
T  44769941 cattttgaacgtgaaaataaagaagttaccttttgtagcttttgtacaaacgccgtttttttttctatttccaccgctacaacaaacac 44769853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 6271783 - 6271755
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  6271783 cttgtgaaagagagagaaacacaagcatt 6271755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 23444326 - 23444354
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  23444326 cttgtgaaagagagagaaacacaagcatt 23444354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 30861831 - 30861859
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  30861831 cttgtgaaagagagagaaacacaagcatt 30861859  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 42375091 - 42375063
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  42375091 cttgtgaaagagagagaaacacaagcatt 42375063  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 47661923 - 47661895
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  47661923 cttgtgaaagagagagaaacacaagcatt 47661895  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 50384162 - 50384190
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  50384162 cttgtgaaagagagagaaacacaagcatt 50384190  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 51265526 - 51265498
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  51265526 cttgtgaaagagagagaaacacaagcatt 51265498  T

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Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 32 - 128
Target Start/End: Complemental strand, 22489830 - 22489734
Alignment:
Q  32 cgtcccaaggcattttaaacgtgaaaataaagaagctaccttttgtagcttttgtgcaaacggcattttttcctatttctaccggtacaacaaacac 128  Q
    |||||| ||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||| ||||  |||||||||||    
T  22489830 cgtcccgaggcattttgaacatgaaaataaagaagctaccttttctagcttttgtgcaaacggcgtttttttctatttccaccgccacaacaaacac 22489734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 166
Target Start/End: Complemental strand, 1261496 - 1261463
Alignment:
Q  133 ttaatctaagacaatggaaaagctgcacaccaat 166  Q
    |||||||||||||||| |||||||||||||||||    
T  1261496 ttaatctaagacaatgcaaaagctgcacaccaat 1261463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 84
Target Start/End: Complemental strand, 19884749 - 19884717
Alignment:
Q  52 gtgaaaataaagaagctaccttttgtagctttt 84  Q
    |||||||||||||||||| ||||||||||||||    
T  19884749 gtgaaaataaagaagctaacttttgtagctttt 19884717  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 30476531 - 30476559
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  30476531 cttgtgaaagagagagaaacacaagcatt 30476559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 33689257 - 33689229
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  33689257 cttgtgaaagagagagaaacacaagcatt 33689229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 43139766 - 43139794
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  43139766 cttgtgaaagagagagaaacacaagcatt 43139794  T

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Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 34 - 133
Target Start/End: Original strand, 7395592 - 7395691
Alignment:
Q  34 tcccaaggcattttaaacgtgaaaataaagaagctaccttttgtagcttttgtgcaaacggcattttttcctatttctaccggtacaacaaacacatact 133  Q
    |||| ||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||| ||||   |||||||||| ||||    
T  7395592 tcccgaggcattttgaaagtgaaaataaagaagctaccatttgtagcttttgtgcaaacggcgtttttttctatttccaccgccgcaacaaacacgtact 7395691  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 14229410 - 14229438
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  14229410 cttgtgaaagagagagaaacacaagcatt 14229438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 16514505 - 16514477
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  16514505 cttgtgaaagagagagaaacacaagcatt 16514477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 29508748 - 29508776
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  29508748 cttgtgaaagagagagaaacacaagcatt 29508776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 38933668 - 38933640
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  38933668 cttgtgaaagagagagaaacacaagcatt 38933640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 5e-21; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 34 - 133
Target Start/End: Complemental strand, 45529605 - 45529506
Alignment:
Q  34 tcccaaggcattttaaacgtgaaaataaagaagctaccttttgtagcttttgtgcaaacggcattttttcctatttctaccggtacaacaaacacatact 133  Q
    |||| ||||||||| || |||||||||||||||||| | ||| ||||||||||||||||||| |||||| ||||||| ||||  ||||||||||| ||||    
T  45529605 tcccgaggcattttgaaagtgaaaataaagaagctaacatttatagcttttgtgcaaacggcgtttttttctatttccaccgccacaacaaacacgtact 45529506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 741559 - 741587
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  741559 cttgtgaaagagagagaaacacaagcatt 741587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 5995450 - 5995422
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  5995450 cttgtgaaagagagagaaacacaagcatt 5995422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 15220892 - 15220864
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  15220892 cttgtgaaagagagagaaacacaagcatt 15220864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 17127621 - 17127649
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  17127621 cttgtgaaagagagagaaacacaagcatt 17127649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 29179654 - 29179682
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  29179654 cttgtgaaagagagagaaacacaagcatt 29179682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 32540805 - 32540833
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  32540805 cttgtgaaagagagagaaacacaagcatt 32540833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 37155127 - 37155099
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  37155127 cttgtgaaagagagagaaacacaagcatt 37155099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 44706841 - 44706869
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  44706841 cttgtgaaagagagagaaacacaagcatt 44706869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 45728368 - 45728340
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  45728368 cttgtgaaagagagagaaacacaagcatt 45728340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 48993974 - 48994002
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  48993974 cttgtgaaagagagagaaacacaagcatt 48994002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 34229722 - 34229693
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcattc 30  Q
    ||||||||||||||||||||||||||||||    
T  34229722 cttgtgaaagagagagaaacacaagcattc 34229693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 5033242 - 5033214
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  5033242 cttgtgaaagagagagaaacacaagcatt 5033214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 6296686 - 6296658
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  6296686 cttgtgaaagagagagaaacacaagcatt 6296658  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 8243445 - 8243473
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  8243445 cttgtgaaagagagagaaacacaagcatt 8243473  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 33841648 - 33841676
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  33841648 cttgtgaaagagagagaaacacaagcatt 33841676  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 34541860 - 34541888
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  34541860 cttgtgaaagagagagaaacacaagcatt 34541888  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 35441026 - 35441054
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  35441026 cttgtgaaagagagagaaacacaagcatt 35441054  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 15568909 - 15568864
Alignment:
Q  32 cgtcccaaggcattttaaacgtgaaaataaagaagctaccttttgt 77  Q
    |||||| |||| |||| |||||||||||||||||| ||||||||||    
T  15568909 cgtcccgaggcgttttgaacgtgaaaataaagaagttaccttttgt 15568864  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 38975886 - 38975858
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  38975886 cttgtgaaagagagagaaacacaagcatt 38975858  T

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Target: scaffold1033 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 2294 - 2266
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  2294 cttgtgaaagagagagaaacacaagcatt 2266  T

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Target: scaffold1029 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 2294 - 2266
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  2294 cttgtgaaagagagagaaacacaagcatt 2266  T

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Target: scaffold0586 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 7104 - 7132
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  7104 cttgtgaaagagagagaaacacaagcatt 7132  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 2093994 - 2094022
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  2093994 cttgtgaaagagagagaaacacaagcatt 2094022  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 2953271 - 2953243
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  2953271 cttgtgaaagagagagaaacacaagcatt 2953243  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 3899920 - 3899892
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  3899920 cttgtgaaagagagagaaacacaagcatt 3899892  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 16439219 - 16439191
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  16439219 cttgtgaaagagagagaaacacaagcatt 16439191  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 16971225 - 16971197
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  16971225 cttgtgaaagagagagaaacacaagcatt 16971197  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 19598413 - 19598385
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  19598413 cttgtgaaagagagagaaacacaagcatt 19598385  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 29699448 - 29699420
Alignment:
Q  1 cttgtgaaagagagagaaacacaagcatt 29  Q
    |||||||||||||||||||||||||||||    
T  29699448 cttgtgaaagagagagaaacacaagcatt 29699420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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