View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7708_low_59 (Length: 206)

Name: NF7708_low_59
Description: NF7708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7708_low_59
NF7708_low_59
[»] chr5 (2 HSPs)
chr5 (35-191)||(42949371-42949527)
chr5 (151-191)||(42949552-42949592)
[»] chr8 (2 HSPs)
chr8 (35-188)||(2851171-2851322)
chr8 (35-188)||(2903203-2903354)
[»] scaffold0177 (1 HSPs)
scaffold0177 (1-34)||(1831-1864)
[»] chr7 (3 HSPs)
chr7 (1-34)||(30222722-30222755)
chr7 (1-34)||(36673843-36673876)
chr7 (1-34)||(41126315-41126348)
[»] chr6 (1 HSPs)
chr6 (1-34)||(2138644-2138677)
[»] chr3 (2 HSPs)
chr3 (1-34)||(53047973-53048006)
chr3 (1-34)||(53049044-53049077)
[»] chr1 (2 HSPs)
chr1 (1-34)||(2237985-2238018)
chr1 (1-34)||(35684210-35684243)
[»] scaffold0024 (1 HSPs)
scaffold0024 (2-34)||(72993-73025)


Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 35 - 191
Target Start/End: Original strand, 42949371 - 42949527
Alignment:
Q  35 tatcttgggttattgactcactcatgtacatgttttgagagtttgaacctcggtccccgtaactcattttcaacaattttaattttgatattcaattatc 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42949371 tatcttgggttattgactcactcatgtacatgttttgagagtttgaacctcggtccccgtaactcattttcaacaattttaattttgatattcaattatc 42949470  T
Q  135 tgcacgaggcaagagctttatctcttgagggttgttttcaatttatcacttgttctt 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42949471 tgcacgaggcaagagctttatctcttgagggttgttttcaatttatcacttgttctt 42949527  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 151 - 191
Target Start/End: Original strand, 42949552 - 42949592
Alignment:
Q  151 tttatctcttgagggttgttttcaatttatcacttgttctt 191  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  42949552 tttatcttttgagggttgttttcaatttatcacttgttctt 42949592  T

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Target: chr8 (Bit Score: 97; Significance: 7e-48; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 35 - 188
Target Start/End: Original strand, 2851171 - 2851322
Alignment:
Q  35 tatcttgggttattgactc-actcatgtacatgttttgagagtttgaacctcggtccccgtaactcattttcaacaattttaattttgatattcaattat 133  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||    
T  2851171 tatcttgggttattgactccactcatgtacatgttttgagagtttgaacctcagtccccataactcattttcaacaattttaaatttgatattcaattat 2851270  T
Q  134 ctgcacgaggcaagagctttatctcttgagggttgttttcaatttatcacttgtt 188  Q
    |||||| || ||| | |||||||||||| ||   ||||||||||| |||||||||    
T  2851271 ctgcacaagtcaaaatctttatctcttgtgg---gttttcaatttctcacttgtt 2851322  T

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Target: chr8; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 35 - 188
Target Start/End: Original strand, 2903203 - 2903354
Alignment:
Q  35 tatcttgggttattgactc-actcatgtacatgttttgagagtttgaacctcggtccccgtaactcattttcaacaattttaattttgatattcaattat 133  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||    
T  2903203 tatcttgggttattgactccactcatgtacatgttttgagagtttgaacctcagtccccataactcattttcaacaattttaaatttgatattcaattat 2903302  T
Q  134 ctgcacgaggcaagagctttatctcttgagggttgttttcaatttatcacttgtt 188  Q
    |||||| || ||| | |||||||||||| ||   ||||||||||| |||||||||    
T  2903303 ctgcacaagtcaaaatctttatctcttgtgg---gttttcaatttctcacttgtt 2903354  T

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Target: scaffold0177 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 1831 - 1864
Alignment:
Q  1 ccttatgtcttctgtcgttacctctattggtcct 34  Q
    ||||||||||||||||||||||||| ||||||||    
T  1831 ccttatgtcttctgtcgttacctcttttggtcct 1864  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 30222722 - 30222755
Alignment:
Q  1 ccttatgtcttctgtcgttacctctattggtcct 34  Q
    ||||||||||||||||||||||||| ||||||||    
T  30222722 ccttatgtcttctgtcgttacctcttttggtcct 30222755  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 36673876 - 36673843
Alignment:
Q  1 ccttatgtcttctgtcgttacctctattggtcct 34  Q
    ||||||||||||||||||||||||| ||||||||    
T  36673876 ccttatgtcttctgtcgttacctcttttggtcct 36673843  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 41126315 - 41126348
Alignment:
Q  1 ccttatgtcttctgtcgttacctctattggtcct 34  Q
    ||||||||||||||||||||||||| ||||||||    
T  41126315 ccttatgtcttctgtcgttacctcttttggtcct 41126348  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 2138677 - 2138644
Alignment:
Q  1 ccttatgtcttctgtcgttacctctattggtcct 34  Q
    ||||||||||||||||||||||||| ||||||||    
T  2138677 ccttatgtcttctgtcgttacctcttttggtcct 2138644  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 53047973 - 53048006
Alignment:
Q  1 ccttatgtcttctgtcgttacctctattggtcct 34  Q
    ||||||||||||||||||||||||| ||||||||    
T  53047973 ccttatgtcttctgtcgttacctcttttggtcct 53048006  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 53049077 - 53049044
Alignment:
Q  1 ccttatgtcttctgtcgttacctctattggtcct 34  Q
    ||||||||||||||||||||||||| ||||||||    
T  53049077 ccttatgtcttctgtcgttacctcttttggtcct 53049044  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 2238018 - 2237985
Alignment:
Q  1 ccttatgtcttctgtcgttacctctattggtcct 34  Q
    ||||||||||||||||||||||||| ||||||||    
T  2238018 ccttatgtcttctgtcgttacctcttttggtcct 2237985  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 35684243 - 35684210
Alignment:
Q  1 ccttatgtcttctgtcgttacctctattggtcct 34  Q
    ||||||||||||||||||||||||| ||||||||    
T  35684243 ccttatgtcttctgtcgttacctcttttggtcct 35684210  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 73025 - 72993
Alignment:
Q  2 cttatgtcttctgtcgttacctctattggtcct 34  Q
    |||||||||||||||||||||||| ||||||||    
T  73025 cttatgtcttctgtcgttacctcttttggtcct 72993  T

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