View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708_low_7 (Length: 518)
Name: NF7708_low_7
Description: NF7708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 24307160 - 24307517
Alignment:
| Q |
1 |
caaaaattctctacatatattcgccatggctgatatttgacaaaactaacccagatcaatgctgccgatggcggatagaggaaagccaaaaaccagacat |
100 |
Q |
| |
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|||||||||| |||| |||||| |||| || |||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
24307160 |
caaaaattctttacagatattcaccattgccgatatttgacaacactaacccaaatcaatattgccgatggcggatagaggaaagccaaaaaccagacat |
24307259 |
T |
|
| Q |
101 |
gcaggccaacatatggaaccgttgtatccaagtatggtcccatgacggcgcaatccatcacaaattgggcatagcagtttcccaaaaattcttcacagat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24307260 |
gcaggccaacatatggaaccgttgtatccaagtatggtcccatgacggcgcaatccatcacaaattgggcatagcagtttcccaaaaattcttgacagat |
24307359 |
T |
|
| Q |
201 |
atccgccaatccatgactaatattcaaccacactaacacaaatccagatgaaatagaaatatcgtattattgattgaaacagaagatatttacattttca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
24307360 |
atccgccaatccatgactaatattcaaccacactaacccaaatccagatgaaatagaaatattgtattattgattgaaacagaagatatttac-----ta |
24307454 |
T |
|
| Q |
301 |
acgcctatatctacgtttctcctctaagaaactcgccagatcagaaaatcaaatcataacacc |
363 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24307455 |
ctgcctatatctacgtttctcctctaagaaactcgccagatcagaaaatcaaatcataacacc |
24307517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 24366160 - 24365803
Alignment:
| Q |
1 |
caaaaattctctacatatattcgccatggctgatatttgacaaaactaacccagatcaatgctgccgatggcggatagaggaaagccaaaaaccagacat |
100 |
Q |
| |
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|||||||||| |||| |||||| |||| || |||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
24366160 |
caaaaattctttacagatattcaccattgccgatatttgacaacactaacccaaatcaatattgccgatggcggatagaggaaagccaaaaaccagacat |
24366061 |
T |
|
| Q |
101 |
gcaggccaacatatggaaccgttgtatccaagtatggtcccatgacggcgcaatccatcacaaattgggcatagcagtttcccaaaaattcttcacagat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24366060 |
gcaggccaacatatggaaccgttgtatccaagtatggtcccatgacggcgcaatccatcacaaattgggcatagcagtttcccaaaaattcttgacagat |
24365961 |
T |
|
| Q |
201 |
atccgccaatccatgactaatattcaaccacactaacacaaatccagatgaaatagaaatatcgtattattgattgaaacagaagatatttacattttca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
24365960 |
atccgccaatccatgactaatattcaaccacactaacccaaatccagatgaaatagaaatattgtattattgattgaaacagaagatatttac-----ta |
24365866 |
T |
|
| Q |
301 |
acgcctatatctacgtttctcctctaagaaactcgccagatcagaaaatcaaatcataacacc |
363 |
Q |
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| T |
24365865 |
ctgcctatatctacgtttctcctctaagaaactcgccagatcagaaaatcaaatcataacacc |
24365803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 368 - 503
Target Start/End: Complemental strand, 24365763 - 24365629
Alignment:
| Q |
368 |
aatcacaaggcaaggatttataaccaaatattcaatttcacaatagttactgaataaaagaaaaatcaatactatgtttaagtgaatcggtgaataaaat |
467 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||| || || || | ||| |||| ||||||||||||||||| | |
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| T |
24365763 |
aatcacaaggcaaggatttataaccaaatattcaatttcataatcgttactgaat-aaaggaatattaagagtatatttatgtgaatcggtgaataaagt |
24365665 |
T |
|
| Q |
468 |
aagattgatttgttttatgaatgacgagaaatatat |
503 |
Q |
| |
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||||||| |||||||||||||||| ||||||||||| |
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| T |
24365664 |
aagattggtttgttttatgaatgatgagaaatatat |
24365629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 368 - 503
Target Start/End: Original strand, 24307557 - 24307692
Alignment:
| Q |
368 |
aatcacaaggcaaggatttataaccaaatattcaatttcacaatagttactgaataaaagaaaaatcaatacta-tgtttaagtgaatcggtgaataaaa |
466 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||| || || || | || | |||| ||||||||||||||||| |
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| T |
24307557 |
aatcacaaggcaaggatttataaccaaatattcaatttcataatcgttactgaat-aaaggaatattaagagtattatttatgtgaatcggtgaataaag |
24307655 |
T |
|
| Q |
467 |
taagattgatttgttttatgaatgacgagaaatatat |
503 |
Q |
| |
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|||||||| |||||||||||||||| ||||||||||| |
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| T |
24307656 |
taagattggtttgttttatgaatgatgagaaatatat |
24307692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 24307131 - 24307179
Alignment:
| Q |
154 |
tccatcacaaattgggcatagcagtttcccaaaaattcttcacagatat |
202 |
Q |
| |
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|||||||||| ||||||||| | |||| |||||||||||| |||||||| |
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| T |
24307131 |
tccatcacaagttgggcatatcggttttccaaaaattctttacagatat |
24307179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 24366189 - 24366141
Alignment:
| Q |
154 |
tccatcacaaattgggcatagcagtttcccaaaaattcttcacagatat |
202 |
Q |
| |
|
|||||||||| ||||||||| | |||| |||||||||||| |||||||| |
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| T |
24366189 |
tccatcacaagttgggcatatcggttttccaaaaattctttacagatat |
24366141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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