View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7708_low_9 (Length: 486)
Name: NF7708_low_9
Description: NF7708
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7708_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 11 - 470
Target Start/End: Original strand, 39784698 - 39785155
Alignment:
| Q |
11 |
atactgttggagattaaacaaaacaaaactgttatgtaagaatttaagattcnnnnnnnccctttaaagacacagaaaacgaagtggtatattgcatgag |
110 |
Q |
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| T |
39784698 |
atactgttggagattaaacaaaacaaaactgttatgtaagaatttaagattctttttttccctttaaagacacagaaaacgaagtggtatattgcatgag |
39784797 |
T |
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| Q |
111 |
ggtttagaagaagcatgccaaacaaatctcagtgacttgaccaatgtgattccatttttgtggaagagatgcctcagacaggtccagcaatgtagatata |
210 |
Q |
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| T |
39784798 |
gggttagaagaagcatgccaaacaaatctcagtgacttgaccaatgtgattccatttttgtg-aagagatgcctcagacaggtccagcaatgtagatata |
39784896 |
T |
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| Q |
211 |
ttaaattagtagtaacagtaaagatagggaaataaattaatacacgcattattagcactactatgatataaaatttatattattataannnnnnnnnnnn |
310 |
Q |
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| T |
39784897 |
ttaaattagtagtaacagtaaagatagggaaataaattaatacacgcattattagcactactatgatataaaatttatattattataa-ttttttttttt |
39784995 |
T |
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| Q |
311 |
nnnnnaggatcacaaggtcttggttttctctagacaaatcatcaacataacagcatagcttgctaagttgaatcacatgcacctcaaatttctatatcat |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39784996 |
tttttaggatcacaaggtcttggttttctctagacaaatcatcaacataacagcatagcttgctaagttgaatcacatgcacctcaaatttctatatcat |
39785095 |
T |
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| Q |
411 |
taaataattggtcatgctcagttgtattaatattaaacaaattgtgttacattatattat |
470 |
Q |
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| T |
39785096 |
taaataattggtcatgctcagttgtattaatattaaacaaattgtgttacattatattat |
39785155 |
T |
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