View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7709_high_3 (Length: 669)

Name: NF7709_high_3
Description: NF7709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7709_high_3
NF7709_high_3
[»] chr7 (1 HSPs)
chr7 (1-577)||(37147209-37147788)
[»] chr1 (11 HSPs)
chr1 (2-578)||(46621348-46621930)
chr1 (29-587)||(46627060-46627621)
chr1 (170-302)||(46428924-46429056)
chr1 (342-513)||(15800356-15800527)
chr1 (443-513)||(15820828-15820898)
chr1 (440-514)||(15829939-15830013)
chr1 (440-514)||(15831667-15831741)
chr1 (440-514)||(15833394-15833468)
chr1 (442-513)||(15828314-15828385)
chr1 (254-295)||(46378739-46378780)
chr1 (260-316)||(46430349-46430405)
[»] chr5 (6 HSPs)
chr5 (307-430)||(39174079-39174202)
chr5 (440-516)||(37328099-37328175)
chr5 (442-509)||(22654325-22654392)
chr5 (352-384)||(38750124-38750156)
chr5 (352-384)||(38865932-38865964)
chr5 (352-384)||(39310678-39310710)
[»] scaffold0496 (1 HSPs)
scaffold0496 (260-404)||(12299-12443)
[»] scaffold0754 (1 HSPs)
scaffold0754 (440-514)||(3910-3984)
[»] scaffold0563 (5 HSPs)
scaffold0563 (440-514)||(10442-10516)
scaffold0563 (440-514)||(760-834)
scaffold0563 (440-514)||(3283-3357)
scaffold0563 (440-514)||(5111-5185)
scaffold0563 (440-514)||(7577-7651)
[»] scaffold0492 (1 HSPs)
scaffold0492 (440-514)||(802-876)
[»] chr6 (1 HSPs)
chr6 (257-325)||(25082377-25082445)


Alignment Details
Target: chr7 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 577
Target Start/End: Original strand, 37147209 - 37147788
Alignment:
Q  1 ctaccatagcattagatatatattggtaggagttaggacagtcttaaaaggagagctcaaacgcttaaacataatgaagctttgaaacctacagcaataa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  37147209 ctaccatagcattagatatatattggtaggagttaggacagtcttaaaaggagagctcaaacgcttaaacataatgaagccttgaaacctacagcaataa 37147308  T
Q  101 aattagcatataatataaca----attcaaaagcttaagccagcaatgaaagtgaacataatgaaaggggaagaagttttagcttacatttataagtccc 196  Q
    ||| ||||||||||||||||    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  37147309 aataagcatataatataacatttaattcaaaagcttaagccagcaatgaaagtgaacataatggaaggggaagaagttttagtttacatttataagtccc 37147408  T
Q  197 acatcgtgtatttcataaaagaaactagtctttataaacttatgacaaggttgtcaccttgccgagttggataacatcaacttgtaacccaagtgggggc 296  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||    
T  37147409 acatcgtgtatttcataaaagaaactagtctttataatcttatgacaaggctatcagcttgccgagttggataacatcaacttgtaacccaagtgggggc 37147508  T
Q  297 aacaatgcggtggaacatggcttaggatttgccaggttgggtaggtggctgcaccatgctggcctgtccactccaagttgagagttggccaatgggtcct 396  Q
    ||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  37147509 aacaatgtggtggaacatggcttaggatttgccaggttgggttagtggctgcaccatgctggcctgcccactccaagttgagagttggccaatgggacct 37147608  T
Q  397 aggtgaaggcttgagtctccttggtcctagactggtggacatagcgtgaggctggcttcacagagcagtgagtaccactggctcttgacagtggagggat 496  Q
    ||| ||||||||||||||||||||||||||||||| || ||  ||||||||||||||||||||||||| ||||||  | | |||||||||||||||||||    
T  37147609 aggcgaaggcttgagtctccttggtcctagactggcgggcactgcgtgaggctggcttcacagagcagcgagtactgccgcctcttgacagtggagggat 37147708  T
Q  497 aacaggctgctgcacttctagcctaccatgcctggttagcctagccacatgaaccaccacttttttgtttcaagtgtcact 577  Q
    |||||||||||||||| |||||| || | ||||||| |||||||| |||||||||||||| ||||||||||||| ||||||    
T  37147709 aacaggctgctgcactgctagcccacaaagcctggtgagcctagctacatgaaccaccac-tttttgtttcaagcgtcact 37147788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 2 - 578
Target Start/End: Complemental strand, 46621930 - 46621348
Alignment:
Q  2 taccatagcattagatatatattggtaggagttaggacagtcttaaaaggagagctcaaacgcttaaacataatgaagctttgaaacctacagcaataaa 101  Q
    ||||||||||| | ||||||||  |||||| ||||||||||| || ||||||||| |||| ||||||||| || ||||| |||||||||||| |||||||    
T  46621930 taccatagcatcaaatatatatgtgtaggaattaggacagtcatagaaggagagcccaaaagcttaaacacaacgaagccttgaaacctacatcaataaa 46621831  T
Q  102 attagcatataatataacaattcaaaagcttaagccagcaatgaaagt--------gaacataatgaaaggggaagaagttttagcttacatttataagt 193  Q
    |||||||||  || | |  ||||||||||||| |  ||||||||||||        ||||||  || |||||||||||||||||| | ||||||| ||||    
T  46621830 attagcatagcatctta--attcaaaagcttaggtgagcaatgaaagttgaacaatgaacatggtggaaggggaagaagttttagttaacatttagaagt 46621733  T
Q  194 cccacatcgtgtatttcataaaagaaactagtctttataaacttatgacaaggttgtcaccttgccgagttggataacatcaacttgtaacccaagtggg 293  Q
    ||||||||| | ||||||| | |||||  ||||| ||||||||| || ||||| || || ||||||||||||| |||| |||||||||||||||||||||    
T  46621732 cccacatcgagaatttcatgatagaaataagtctatataaacttctggcaaggctgccagcttgccgagttgggtaacttcaacttgtaacccaagtggg 46621633  T
Q  294 ggcaacaatgcggtggaacatggcttaggatttgccaggttgggtaggtggctgcaccatgctggcctgtccactccaagttgagagttggccaatgggt 393  Q
    ||||  || | | |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |     
T  46621632 ggcatgaaggtgatggaacatggcttaagatttgccaggttgggttggtggctgcaccatgctggcctgcccactccaagttgagagttggccaatgtga 46621533  T
Q  394 cctaggtgaaggcttgagtctccttggtcctagactggtggacatagcgtgaggctggcttcacagagcagtgagtaccactggctcttgacagtggagg 493  Q
    |||||| ||||||||||||||||||||||||||||||| || ||  | |||||||||| ||||||||||||  |  ||| | | ||||||||||||||||    
T  46621532 cctaggcgaaggcttgagtctccttggtcctagactggagggcactgtgtgaggctggtttcacagagcagcaaacacctccgtctcttgacagtggagg 46621433  T
Q  494 gataacaggctgctgcacttctagcctaccatgcctggttagcctagccacatgaaccaccacttttttgtttcaagtgtcactt 578  Q
    |||||| ||| ||||||||||||| | |  ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  46621432 gataactggccgctgcacttctagtccaatatgcctggtgagcctagccacctgaaccaccacttttttgtttcaagtgtcactt 46621348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 29 - 587
Target Start/End: Complemental strand, 46627621 - 46627060
Alignment:
Q  29 ggagttaggacagtcttaaaaggagagctcaaacgcttaaacataatgaagctttgaaacctacagcaataaaattagcatataatataacaattcaaaa 128  Q
    |||||||||||||||||||| |||||| ||| | || |||||| ||||||||        ||||||||||||||||||||||  || | |  ||||||||    
T  46627621 ggagttaggacagtcttaaagggagagttcacaggcataaacacaatgaagc--------ctacagcaataaaattagcatagcatctta--attcaaaa 46627532  T
Q  129 gcttaagccagcaatgaaagt-gaacataatgaaaggggaagaagttttagcttacatttataagtcccacatcgtgtatttcataaaagaaactagtct 227  Q
    ||||| ||||||||||||||| ||||||  || |||||||||||||||||| | ||||||| ||||||||||||| ||||||||| |||||||  | |||    
T  46627531 gcttaggccagcaatgaaagttgaacatggtggaaggggaagaagttttagttaacatttagaagtcccacatcgagtatttcatgaaagaaataattct 46627432  T
Q  228 ttataaacttatgacaaggttgtcaccttgccgagttggataacatcaacttgtaacccaagtgggggcaacaatgcggtggaacatggcttaggatttg 327  Q
     ||||| ||| |||||||| || || ||||||||| ||| |||| |||||||||||| ||||||||||||  || | | |||||||||||||||||||||    
T  46627431 atataatcttctgacaaggctgccagcttgccgagctgggtaacttcaacttgtaactcaagtgggggcatgaaggtgatggaacatggcttaggatttg 46627332  T
Q  328 ccaggttgggtaggtggctgcaccatgctggcctgtccactccaagttgagagtt-ggccaatgggtcctaggtgaaggcttgagtctccttggt----- 421  Q
    ||||||||||| |||||||||||||||| |||||| || |||||||||||||||| |||||||||| |||||| |||||||||||||||||||||         
T  46627331 ccaggttgggttggtggctgcaccatgccggcctgcccgctccaagttgagagttgggccaatgggacctaggcgaaggcttgagtctccttggtcctag 46627232  T
Q  422 -cctagactggtggacatagcgtgaggctggcttcacagagcagtgagtaccactggctcttgac----agtggagggataacaggctgctgcacttcta 516  Q
     |||||||||| || ||  | |||||||||| ||||||||||||  |  ||| | ||||||||||    |||||||||||||| ||| ||||||||||||    
T  46627231 acctagactggagggcactgtgtgaggctggtttcacagagcagcaaacacctccggctcttgacagtgagtggagggataactggccgctgcacttcta 46627132  T
Q  517 gcctaccatgcctggttagcctagccacatgaaccaccac-ttttttgtttcaagtgtcacttgttacataa 587  Q
    ||| |  ||||||||| ||||||||||| |||||||| || ||||||||||||||| ||||||||| |||||    
T  46627131 gcccaatatgcctggtgagcctagccacttgaaccacaactttttttgtttcaagtatcacttgttccataa 46627060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 170 - 302
Target Start/End: Original strand, 46428924 - 46429056
Alignment:
Q  170 aagttttagcttacatttataagtcccacatcgtgtatttcataaaagaaactagtctttataaacttatgacaaggttgtcaccttgccgagttggata 269  Q
    ||||||||| | || |||| ||||||||||||||||||||||| |||||||  ||||||||||| ||| |||||||| ||||| ||||| ||||||| ||    
T  46428924 aagttttagttaacttttagaagtcccacatcgtgtatttcatgaaagaaataagtctttataaccttctgacaaggctgtcaacttgctgagttgggta 46429023  T
Q  270 acatcaacttgtaacccaagtgggggcaacaat 302  Q
    ||  ||||||||||||||| |||||||| ||||    
T  46429024 accccaacttgtaacccaactgggggcatcaat 46429056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 342 - 513
Target Start/End: Complemental strand, 15800527 - 15800356
Alignment:
Q  342 tggctgcaccatgctggcctgtccactccaagttgagagttggccaatgggtcctaggtgaaggcttgagtctccttggtcctagactggtggacatagc 441  Q
    ||||||||  ||||||||||| || |||||||||||||||||| | | ||| | |  | |||||| |  ||||| | | ||||||||  | ||  || ||    
T  15800527 tggctgcaatatgctggcctgcccgctccaagttgagagttggtccacgggacttgtgcgaaggcctatgtctcttggttcctagacgagagggaatggc 15800428  T
Q  442 gtgaggctggcttcacagagcagtgagtaccactggctcttgacagtggagggataacaggctgctgcactt 513  Q
    |||||||||| |||||||||||| || |||| ||||||| ||||||||||||||| || |||||||||||||    
T  15800427 gtgaggctggtttcacagagcagcgaatacctctggctcctgacagtggagggattacgggctgctgcactt 15800356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 443 - 513
Target Start/End: Complemental strand, 15820898 - 15820828
Alignment:
Q  443 tgaggctggcttcacagagcagtgagtaccactggctcttgacagtggagggataacaggctgctgcactt 513  Q
    ||||||||| ||||||||||| ||| |||  ||||||| ||||||||||||||| ||||||||| ||||||    
T  15820898 tgaggctggtttcacagagcaatgaatacatctggctcctgacagtggagggattacaggctgcagcactt 15820828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 440 - 514
Target Start/End: Complemental strand, 15830013 - 15829939
Alignment:
Q  440 gcgtgaggctggcttcacagagcagtgagtaccactggctcttgacagtggagggataacaggctgctgcacttc 514  Q
    |||||||||||| |||||||||||| || |||| |||||||   ||||||||||||  |||||||||||||||||    
T  15830013 gcgtgaggctggtttcacagagcagcgaatacctctggctcccaacagtggagggactacaggctgctgcacttc 15829939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 440 - 514
Target Start/End: Complemental strand, 15831741 - 15831667
Alignment:
Q  440 gcgtgaggctggcttcacagagcagtgagtaccactggctcttgacagtggagggataacaggctgctgcacttc 514  Q
    |||||||||||| |||||||||||| || |||| |||||||   ||||||||||||  |||||||||||||||||    
T  15831741 gcgtgaggctggtttcacagagcagcgaatacctctggctcccaacagtggagggactacaggctgctgcacttc 15831667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 440 - 514
Target Start/End: Complemental strand, 15833468 - 15833394
Alignment:
Q  440 gcgtgaggctggcttcacagagcagtgagtaccactggctcttgacagtggagggataacaggctgctgcacttc 514  Q
    |||||||||||| |||||||||||| || |||| |||||||   ||||||||||||  |||||||||||||||||    
T  15833468 gcgtgaggctggtttcacagagcagcgaatacctctggctcccaacagtggagggactacaggctgctgcacttc 15833394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 442 - 513
Target Start/End: Complemental strand, 15828385 - 15828314
Alignment:
Q  442 gtgaggctggcttcacagagcagtgagtaccactggctcttgacagtggagggataacaggctgctgcactt 513  Q
    |||||||||| |||||| ||||| || |||| || |||| ||||||||||| ||| ||||||||||||||||    
T  15828385 gtgaggctggtttcacaaagcagcgaatacctctagctcctgacagtggagtgattacaggctgctgcactt 15828314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 295
Target Start/End: Original strand, 46378739 - 46378780
Alignment:
Q  254 cttgccgagttggataacatcaacttgtaacccaagtggggg 295  Q
    |||||||||||||||||||| | |||||||| ||||||||||    
T  46378739 cttgccgagttggataacattagcttgtaactcaagtggggg 46378780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 260 - 316
Target Start/End: Original strand, 46430349 - 46430405
Alignment:
Q  260 gagttggataacatcaacttgtaacccaagtgggggcaacaatgcggtggaacatgg 316  Q
    ||||||| ||| | |||| |||||||||||||||||||  |||| ||||||||||||    
T  46430349 gagttgggtaataccaacctgtaacccaagtgggggcattaatgtggtggaacatgg 46430405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 307 - 430
Target Start/End: Complemental strand, 39174202 - 39174079
Alignment:
Q  307 tggaacatggcttaggatttgccaggttgggtaggtggctgcaccatgctggcctgtccactccaagttgagagttggccaatgggtcctaggtgaaggc 406  Q
    ||||| ||||||||| |||||||| ||||||| | | |||||||||| |||||||||||||| |||||||||||||||||||  || |||||| |||| |    
T  39174202 tggaaaatggcttagaatttgccaagttgggttgatagctgcaccatactggcctgtccacttcaagttgagagttggccaaaaggacctaggcgaagac 39174103  T
Q  407 ttgagtctccttggtcctagactg 430  Q
    | ||||||||||||| | ||||||    
T  39174102 tcgagtctccttggtacaagactg 39174079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 440 - 516
Target Start/End: Complemental strand, 37328175 - 37328099
Alignment:
Q  440 gcgtgaggctggcttcacagagcagtgagtaccactggctcttgacagtggagggataacaggctgctgcacttcta 516  Q
    |||||||||||| ||| |||||||| ||  ||| ||||||||||||||||||||||||||| ||||| ||| |||||    
T  37328175 gcgtgaggctggtttcgcagagcagcgaagacctctggctcttgacagtggagggataacaagctgcagcagttcta 37328099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 442 - 509
Target Start/End: Original strand, 22654325 - 22654392
Alignment:
Q  442 gtgaggctggcttcacagagcagtgagtaccactggctcttgacagtggagggataacaggctgctgc 509  Q
    |||||||||| |||||| ||||| || |||| ||||||||||| ||||||||||||||| ||||||||    
T  22654325 gtgaggctggtttcacatagcagcgaatacctctggctcttgatagtggagggataacaagctgctgc 22654392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 352 - 384
Target Start/End: Original strand, 38750124 - 38750156
Alignment:
Q  352 atgctggcctgtccactccaagttgagagttgg 384  Q
    ||||||||||| |||||||||||||||||||||    
T  38750124 atgctggcctgcccactccaagttgagagttgg 38750156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 352 - 384
Target Start/End: Complemental strand, 38865964 - 38865932
Alignment:
Q  352 atgctggcctgtccactccaagttgagagttgg 384  Q
    ||||||||||| |||||||||||||||||||||    
T  38865964 atgctggcctgcccactccaagttgagagttgg 38865932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 352 - 384
Target Start/End: Complemental strand, 39310710 - 39310678
Alignment:
Q  352 atgctggcctgtccactccaagttgagagttgg 384  Q
    ||||||||||| |||||||||||||||||||||    
T  39310710 atgctggcctgcccactccaagttgagagttgg 39310678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0496 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0496
Description:

Target: scaffold0496; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 260 - 404
Target Start/End: Complemental strand, 12443 - 12299
Alignment:
Q  260 gagttggataacatcaacttgtaacccaagtgggggcaacaatgcggtggaacatggcttaggatttgccaggttgggtaggtggctgcaccatgctggc 359  Q
    ||||||||||||| |||||||||| | ||||||||||| |||   ||| ||||||| || | |||||| || ||||||| | || || ||| ||||||||    
T  12443 gagttggataacaccaacttgtaatctaagtgggggcatcaagatggtagaacatgactaaagatttgtcatgttgggttgatgacttcactatgctggc 12344  T
Q  360 ctgtccactccaagttgagagttggccaatgggtcctaggtgaag 404  Q
    ||| ||||||||||||||||||||| ||||||| |||||| ||||    
T  12343 ctgaccactccaagttgagagttggtcaatgggacctaggcgaag 12299  T

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Target: scaffold0754 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0754
Description:

Target: scaffold0754; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 440 - 514
Target Start/End: Original strand, 3910 - 3984
Alignment:
Q  440 gcgtgaggctggcttcacagagcagtgagtaccactggctcttgacagtggagggataacaggctgctgcacttc 514  Q
    |||||||||||| |||||||||||| || |||| |||||||   ||||||||||||  |||||||||||||||||    
T  3910 gcgtgaggctggtttcacagagcagcgaatacctctggctcccaacagtggagggactacaggctgctgcacttc 3984  T

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Target: scaffold0563 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: scaffold0563
Description:

Target: scaffold0563; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 440 - 514
Target Start/End: Original strand, 10442 - 10516
Alignment:
Q  440 gcgtgaggctggcttcacagagcagtgagtaccactggctcttgacagtggagggataacaggctgctgcacttc 514  Q
    |||||||||||| |||||||||||| || |||| |||||||   ||||||||||||  |||||||||||||||||    
T  10442 gcgtgaggctggtttcacagagcagcgaatacctctggctcccaacagtggagggactacaggctgctgcacttc 10516  T

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Target: scaffold0563; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 514
Target Start/End: Original strand, 760 - 834
Alignment:
Q  440 gcgtgaggctggcttcacagagcagtgagtaccactggctcttgacagtggagggataacaggctgctgcacttc 514  Q
    |||||||| ||| |||||||||||| || |||| |||||||   ||||||||||||  |||||||||||||||||    
T  760 gcgtgaggttggtttcacagagcagcgaatacctctggctcccaacagtggagggactacaggctgctgcacttc 834  T

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Target: scaffold0563; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 514
Target Start/End: Complemental strand, 3357 - 3283
Alignment:
Q  440 gcgtgaggctggcttcacagagcagtgagtaccactggctcttgacagtggagggataacaggctgctgcacttc 514  Q
    |||||||||||| |||||||||||| || |||  |||||||   ||||||||||||  |||||||||||||||||    
T  3357 gcgtgaggctggtttcacagagcagcgaatacttctggctcccaacagtggagggactacaggctgctgcacttc 3283  T

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Target: scaffold0563; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 514
Target Start/End: Complemental strand, 5185 - 5111
Alignment:
Q  440 gcgtgaggctggcttcacagagcagtgagtaccactggctcttgacagtggagggataacaggctgctgcacttc 514  Q
    |||||||||||| |||||||||||| || |||  |||||||   ||||||||||||  |||||||||||||||||    
T  5185 gcgtgaggctggtttcacagagcagcgaatacttctggctcccaacagtggagggactacaggctgctgcacttc 5111  T

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Target: scaffold0563; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 514
Target Start/End: Original strand, 7577 - 7651
Alignment:
Q  440 gcgtgaggctggcttcacagagcagtgagtaccactggctcttgacagtggagggataacaggctgctgcacttc 514  Q
    |||||||||||| |||||||||||| || |||  |||||||   ||||||||||||  |||||||||||||||||    
T  7577 gcgtgaggctggtttcacagagcagcgaatacttctggctcccaacagtggagggactacaggctgctgcacttc 7651  T

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Target: scaffold0492 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 440 - 514
Target Start/End: Original strand, 802 - 876
Alignment:
Q  440 gcgtgaggctggcttcacagagcagtgagtaccactggctcttgacagtggagggataacaggctgctgcacttc 514  Q
    |||||||||||| |||||||||||| || |||| |||||||   ||||||||||||  |||||||||||||||||    
T  802 gcgtgaggctggtttcacagagcagcgaatacctctggctcccaacagtggagggactacaggctgctgcacttc 876  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 257 - 325
Target Start/End: Complemental strand, 25082445 - 25082377
Alignment:
Q  257 gccgagttggataacatcaacttgtaacccaagtgggggcaacaatgcggtggaacatggcttaggatt 325  Q
    ||||||||||||||||||| |||||||| | ||||| ||||  |||| |||||||||||| | ||||||    
T  25082445 gccgagttggataacatcagcttgtaactcgagtggaggcattaatgtggtggaacatggttcaggatt 25082377  T

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