View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7709_high_4 (Length: 469)
Name: NF7709_high_4
Description: NF7709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7709_high_4 |
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| [»] scaffold0568 (1 HSPs) |
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Alignment Details
Target: scaffold0568 (Bit Score: 156; Significance: 1e-82; HSPs: 1)
Name: scaffold0568
Description:
Target: scaffold0568; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 105 - 291
Target Start/End: Original strand, 85 - 269
Alignment:
| Q |
105 |
tgaggctgccatataccctccggcccaaacctgcaatagatcaccgcaaattttcaaggcatacccaagcctcaaacatatgtctgcgaaaagagcctgt |
204 |
Q |
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| T |
85 |
tgaggctgccatataccctcctgcccaaacctgcaacagatcaccgcaaattttcaaggcatacccaagcctcaaacatatgtctccgaaaagagcctgt |
184 |
T |
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| Q |
205 |
ttccagctcaattaaatactccccatattttattgaatgtgataatagcagcacattccattaatattcaattggaatgacatataa |
291 |
Q |
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| T |
185 |
ttccagctcaattaaataccccccatattttcttgaatgtgataatagcagcacattccatta--attcaattggaatgacatataa |
269 |
T |
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Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 105 - 291
Target Start/End: Complemental strand, 45629544 - 45629360
Alignment:
| Q |
105 |
tgaggctgccatataccctccggcccaaacctgcaatagatcaccgcaaattttcaaggcatacccaagcctcaaacatatgtctgcgaaaagagcctgt |
204 |
Q |
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| T |
45629544 |
tgaggctgccatataccctcctgcccaaacctgcaacagatcaccgcaaattttcaaggcatacccaagcctcaaacatatgtctccgaaaagagcctgt |
45629445 |
T |
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| Q |
205 |
ttccagctcaattaaatactccccatattttattgaatgtgataatagcagcacattccattaatattcaattggaatgacatataa |
291 |
Q |
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| T |
45629444 |
ttccagctcaattaaataccccccatattttcttgaatgtgataatagcagcacattccatta--attcaattggaatgacatataa |
45629360 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 398
Target Start/End: Original strand, 43261287 - 43261338
Alignment:
| Q |
347 |
gccaaagccaaaagaatggaactacgaatgttgcaggagtcttattagttat |
398 |
Q |
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| T |
43261287 |
gccaaagccaaaagaatggaactagaaatgttgtaggagccttatcagttat |
43261338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 379
Target Start/End: Complemental strand, 45481769 - 45481707
Alignment:
| Q |
319 |
cgagccttatcagctattcacatggagc---gccaaagccaaaagaatggaactacgaatgttg |
379 |
Q |
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| T |
45481769 |
cgagccttatcagctat-cacatggagcaaagccaaagccaaaagaatgaaactaggagtgttg |
45481707 |
T |
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