View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7709_high_5 (Length: 437)
Name: NF7709_high_5
Description: NF7709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7709_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 3 - 286
Target Start/End: Complemental strand, 51498769 - 51498486
Alignment:
| Q |
3 |
acatgacatgtaaaggaagnnnnnnnttagaaaacctaagcacgtagaatttaatccggtctgttaaactaatgaaaggaaaatgaatacaactggagaa |
102 |
Q |
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| T |
51498769 |
acatgacatgtaaaggaagaaaaaaattagaaaacctaagctcgtagaatttaatccggtctgttaaactaatgaaaggaaaatgaatacaactggagaa |
51498670 |
T |
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| Q |
103 |
caatattttaaacaagagtgacctatgaccaagagaaagatgagagaagttacaattaacattgtatatactaagcacgccataaccatgtatgtttata |
202 |
Q |
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| T |
51498669 |
caatattttaaacaagagtgacctatgaccaagagaaagatgagagaagttacaattaacattgtatatactaagcacgccataaccagatatgtttata |
51498570 |
T |
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| Q |
203 |
atgttgagagaacaacattttacacgcaccaaggactaagacaaaataaattagacaattcaattagtactaaggtgtatatat |
286 |
Q |
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| T |
51498569 |
atgttgagagaacaacattttacacgcaccaaggactaagacaaaataaattagacaattcaattagtactaaggtatatatat |
51498486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 283 - 341
Target Start/End: Complemental strand, 51498451 - 51498393
Alignment:
| Q |
283 |
atatctcttcataggcagcagaccatctagaaactttttcttaatgagcaactgtccac |
341 |
Q |
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| T |
51498451 |
atatctcttcataggcagcagaccatctagaaactttttcttaatgagcaactgtccac |
51498393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 390 - 431
Target Start/End: Complemental strand, 51498293 - 51498252
Alignment:
| Q |
390 |
catttaagcttctattaatcccagaaagatggaaacaccaaa |
431 |
Q |
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| T |
51498293 |
catttaagcttctattaatcccagaaagatggaaacaccaaa |
51498252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 30205623 - 30205660
Alignment:
| Q |
124 |
cctatgaccaagagaaagatgagagaagttacaattaa |
161 |
Q |
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| T |
30205623 |
cctatgactaagagaaagatgagagaagttataattaa |
30205660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 30205783 - 30205823
Alignment:
| Q |
299 |
agcagaccatctagaaactttttcttaatgagcaactgtcc |
339 |
Q |
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| T |
30205783 |
agcagaccatctagacacgtttttttaatgagcaactgtcc |
30205823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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