View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7709_high_6 (Length: 420)
Name: NF7709_high_6
Description: NF7709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7709_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 54 - 402
Target Start/End: Original strand, 12473457 - 12473804
Alignment:
| Q |
54 |
tgtaatgaaatgttatatatgttgtgtttagtataatgtaattagttgtttaattgttcttggatggtttgattacaattattaaagcaataaaccattt |
153 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12473457 |
tgtaatgaaatgttatatatgttgtgtt-agtataatgtaattagttgtttaattgttcttggatggtttgattacaattattaaagcaataaaccattt |
12473555 |
T |
|
| Q |
154 |
agttgaaataatttgtgcatatcttttcaaacttttgggttattaatatttgctcctataatgttagctttatgaacgaacttttttgagatggttttgc |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12473556 |
agttgaaataatttgtgcatatcttttcaaacttttgggttattaatatttgctcctataatgttagctttatgaacgaacttttttgagatggttttgc |
12473655 |
T |
|
| Q |
254 |
aggaaaatatctacgacttctctgtctctctcataannnnnnnnnccttttcttatatctcctatttcaaccttggctcaagttcaatccacttatggac |
353 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12473656 |
aggaaaatatctacgacttctctttctctctcttaatttttctttccttttcttatatctcctatttcaaccttggctcaagttcaatccacttatggac |
12473755 |
T |
|
| Q |
354 |
ttgctcactagggagtatgctatgagattccccaggggagcacccaaga |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12473756 |
ttgctcactagggagtatgctatgagattccccaggggagcacccaaga |
12473804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 113 - 206
Target Start/End: Original strand, 12457537 - 12457632
Alignment:
| Q |
113 |
ttggatggtttgattacaattattaaagcaataaaccatttagttgaaataatttgtgcata-tcttttcaaa-cttttgggttattaatatttgc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||| | |||||||| ||||||||||||| ||||||| |
|
|
| T |
12457537 |
ttggatggtttgattacaattattaaagcaataaactatttagttgaaataatttgcgtatatttttttcaaattttttgggttattattatttgc |
12457632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 12473376 - 12473431
Alignment:
| Q |
1 |
ttatggatagatttgtgccttgctaaaatatgttgtttattcaaatatatcaatgt |
56 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12473376 |
ttatggatagatttgtgccttgctaaaatatgttgtttattcaactatatcaatgt |
12473431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University