View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7709_high_8 (Length: 338)
Name: NF7709_high_8
Description: NF7709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7709_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 196 - 320
Target Start/End: Complemental strand, 17945484 - 17945360
Alignment:
| Q |
196 |
caaaattacgagttgcaacttaattttgatttggacattcaatgaagatcaacctactgataattagtaggaagtcttgtatttttaatgagatattaca |
295 |
Q |
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| T |
17945484 |
caaaattacgagttgcaacttaataactatttggacattcaatgaagatcaacctactgataattagtaggaagtcttgtattttgaatgagatattaca |
17945385 |
T |
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| Q |
296 |
taactgcacaagaagatgacattat |
320 |
Q |
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| T |
17945384 |
aaactgcacaagaagatgacattat |
17945360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 39 - 235
Target Start/End: Complemental strand, 19403809 - 19403603
Alignment:
| Q |
39 |
tgtgtctgttgtaggtgtttacgcattattttgaagaattagaagaggaaccgcttagcgataactttgttgttgtggt-aaaaatgtggaactgtttct |
137 |
Q |
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| T |
19403809 |
tgtgtttgttgtaggtgtttaagcattattttgaagaattagaagaggaagtgcttagggataacttcgttgtagtggtaaaaaatgtggaactgtttct |
19403710 |
T |
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| Q |
138 |
caattccaagtatttggaatgaa---------tgaatttgtgatatagtaaaagactaggaactcaacaaaattacgagttgcaacttaattttgatttg |
228 |
Q |
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| T |
19403709 |
caactccaagttttcggaatgaatgaatctgttgaatttttcatatagtaaaagactaggaactcatcaaaattaccagttgcaacttagtaatgatttt |
19403610 |
T |
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| Q |
229 |
gacattc |
235 |
Q |
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| T |
19403609 |
gacattc |
19403603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 41 - 136
Target Start/End: Complemental strand, 17945582 - 17945487
Alignment:
| Q |
41 |
tgtctgttgtaggtgtttacgcattattttgaagaattagaagaggaaccgcttagcgataactttgttgttgtggtaaaaatgtggaactgtttc |
136 |
Q |
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| T |
17945582 |
tgtctgttgtaggtgtttaagcattatcttgaagaattagaagaggaaccgcttagggataacttcgttgtcgtggtcaaaatgtggaactgtttc |
17945487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 320
Target Start/End: Complemental strand, 19403602 - 19403558
Alignment:
| Q |
275 |
tatttttaatgagatattacataactgcacaagaagatgacattat |
320 |
Q |
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| T |
19403602 |
tatttgtaatgagatattaca-aactgcacaagaagatgacattat |
19403558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 51 - 119
Target Start/End: Original strand, 14426242 - 14426310
Alignment:
| Q |
51 |
aggtgtttacgcattattttgaagaattagaagaggaaccgcttagcgataactttgttgttgtggtaa |
119 |
Q |
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| T |
14426242 |
aggtgtttaagcattattttgaagaattagaagaggaatcccttagagataactttgttgttgtggtaa |
14426310 |
T |
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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 61 - 120
Target Start/End: Original strand, 29199331 - 29199390
Alignment:
| Q |
61 |
gcattattttgaagaattagaagaggaaccgcttagcgataactttgttgttgtggtaaa |
120 |
Q |
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| T |
29199331 |
gcattattttgaggaattggaagaggaatctcttagggataactttgttgttgtggtaaa |
29199390 |
T |
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