View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7709_low_1 (Length: 715)
Name: NF7709_low_1
Description: NF7709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7709_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 520; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Original strand, 52034748 - 52035275
Alignment:
| Q |
1 |
acgaaaagctgaactgggccttcctaattggactactgagcccaataatcatatgggccctaataaaagcctttcccagtcaaaaatggatatcatacat |
100 |
Q |
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| T |
52034748 |
acgaaaagctgaactgggccttcctaattggactactgagcccaataatcatatgggccctaataaaagcctttcccagtcaaaaatggatatcatacat |
52034847 |
T |
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| Q |
101 |
tcacattcctgttctgcttggtgcaactgcaagtatgccaccagctagcacagtgaatttcaattcatggattactgttgcagttatatttaactatttt |
200 |
Q |
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| T |
52034848 |
tcacattcctgttctgcttggtgcaactgcaagtatgccaccagctagcacagtgaatttcaattcatggattactgttgcagttatatttaactatttt |
52034947 |
T |
|
| Q |
201 |
atccacaaatatcgtaagaagtggtgggagagatacaattatattcttgctgctgctttagatgctggattggctttcatgactactcttctatacttta |
300 |
Q |
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| T |
52034948 |
atccacaaatatcgtaagaagtggtgggagagatacaattatattcttgctgctgctttagatgctggattggctttcatgactactcttctatacttta |
52035047 |
T |
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| Q |
301 |
cggttagtagtggtggtataagtttgaattggtggggacaagatgagcattgtcctcttgctacatgtcctactgctaaaggcataattactgatggttg |
400 |
Q |
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| T |
52035048 |
cggttagtagtggtggtataagtttgaattggtggggacaagatgagcattgtcctcttgctacatgtcctactgctaaaggcatagttactgatggttg |
52035147 |
T |
|
| Q |
401 |
tcctacattttgataccattagtccccttttataatttagatttagatggtctcatcatgtatttcatttatttacttcttgttctgctacttttaaatt |
500 |
Q |
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| T |
52035148 |
tcctacattttgataccattagtccccttttataatttagatttagatgctctcatcatgtatttcatttatttacttcttgttctgctacttttaaatt |
52035247 |
T |
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| Q |
501 |
aagttgcttaaagtttttgttgtttgtt |
528 |
Q |
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| T |
52035248 |
aagttgcttaaagtttttgttgtttgtt |
52035275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 549 - 695
Target Start/End: Original strand, 52035268 - 52035424
Alignment:
| Q |
549 |
tgtttatttgaactattttcttgtcttatcaattttagttactagtata----------tagtggaaacttttaaagggtcatgatagttcaaagtaaac |
638 |
Q |
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||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52035268 |
tgtttgtttgaattattttcttgtcttatcaattttagttactagtatatatatatatatagtggaaacttttaaagggtcatgatagttcaaagtaaac |
52035367 |
T |
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| Q |
639 |
taaaacttgatcaaatattattttagtgaatgatcaaactcaattgttgtgaccgtt |
695 |
Q |
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| T |
52035368 |
taaaacttgatcaaatattattttagtgaatgatcaaactcaattgttgtgaccgtt |
52035424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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