View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7709_low_11 (Length: 413)
Name: NF7709_low_11
Description: NF7709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7709_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 13 - 395
Target Start/End: Original strand, 13968593 - 13968976
Alignment:
| Q |
13 |
atcaagaagagaaacactataaatgaaacacaaacaacacnnnnnnnnngaagaaaggaaagagaggaatcaatcgtattcggagagcctttcatttc-a |
111 |
Q |
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| T |
13968593 |
atcaagaagagaaacactataaatgaaacacaaacaacacaaaaaaaaggacgaaaggaaagagaggaatcaatcgtattcggagagcctttcatttcta |
13968692 |
T |
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| Q |
112 |
acgctgctatatcgcgcaagcttgctattcccttctctctttcctttccatgcaaatttcattactctaacttttcatcttccaattttacgtaacaatc |
211 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | || |
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| T |
13968693 |
acgctgctatatcgcgcaagcttgctattctcttctctctttcctttccatgcaaatttcattactctaacttttcatcttccaatttcacgtaaaattc |
13968792 |
T |
|
| Q |
212 |
ataaaaatatatcaatttgatattgtaatattacatttacattcataattcgaagaaaatgagcgttatttcgcgtaacatttggcctgtttgcggtagt |
311 |
Q |
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| T |
13968793 |
ataaaaatatatcaatttgatattgtaatattacatttacattcataattcgaagaaaatgagcgttatttcgcgtaacatttggcctgtttgcggtagt |
13968892 |
T |
|
| Q |
312 |
ttatgttgtttttgtcctgcattgcgggaaagatcaagacatcctattaaacgttacaagaaattgcttgctgatatcttccct |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13968893 |
ttatgttgtttttgtcctgcattgcgggaaagatcaagacatcctattaaacgttacaagaaattgcttgctgatatcttccct |
13968976 |
T |
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