View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7709_low_14 (Length: 323)
Name: NF7709_low_14
Description: NF7709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7709_low_14 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 20 - 323
Target Start/End: Complemental strand, 15441511 - 15441208
Alignment:
| Q |
20 |
atgtctgcatgaagcacattaggtagatgttttgtttcctcgagaactttaggacatgctaaagtggacaagtggcacaataatccagtgatgattttgt |
119 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15441511 |
atgtctgcatcaagcacattaggtagatgttttgtttcctcgagaactttaggacatgctaaagtggacaagtggcacaataatccagtgatgattttgt |
15441412 |
T |
|
| Q |
120 |
caaagcttttgttgagaaccagcaaacttcccctattatccacaaaattcaacttcagacaatgatttcacaggagcagctataaaagttacattaattc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15441411 |
caaagcttttgttgagaaccagcaaacttcccctattatccacaaaattcaacttcagacaatgatttcacaggagcagctataaaagttacattaattc |
15441312 |
T |
|
| Q |
220 |
cgaaataatgtaatagaagtcacgaaaagaacaaatttattacctccagattggatcagaaataggttgtggatcagcaatagtaacagcagttgcacat |
319 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15441311 |
cgaaataatgtaatagaagtcacaaaaagaacaaatttcttacctccagattggatcagaaataggttgtggatcagcaatagtaacagcagttgcacat |
15441212 |
T |
|
| Q |
320 |
cctt |
323 |
Q |
| |
|
|||| |
|
|
| T |
15441211 |
cctt |
15441208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 11788588 - 11788637
Alignment:
| Q |
244 |
aaaagaacaaatttattacctccagattggatcagaaataggttgtggat |
293 |
Q |
| |
|
|||| ||||||||| |||||||||||||||| ||| |||||| ||||||| |
|
|
| T |
11788588 |
aaaaaaacaaattttttacctccagattggagcagcaataggctgtggat |
11788637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University