View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7709_low_17 (Length: 282)

Name: NF7709_low_17
Description: NF7709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7709_low_17
NF7709_low_17
[»] chr3 (14 HSPs)
chr3 (18-282)||(55084902-55085166)
chr3 (156-282)||(38028664-38028790)
chr3 (156-282)||(38039979-38040105)
chr3 (156-282)||(50910076-50910202)
chr3 (178-282)||(38033695-38033799)
chr3 (157-282)||(38036692-38036817)
chr3 (164-282)||(38024781-38024899)
chr3 (164-282)||(38031233-38031351)
chr3 (179-282)||(48840633-48840736)
chr3 (158-282)||(50904692-50904816)
chr3 (219-282)||(38044019-38044082)
chr3 (80-126)||(38036610-38036656)
chr3 (80-124)||(38031142-38031186)
chr3 (242-282)||(50911853-50911893)
[»] chr8 (5 HSPs)
chr8 (156-282)||(21604652-21604778)
chr8 (164-282)||(21607202-21607320)
chr8 (156-257)||(21609702-21609803)
chr8 (220-282)||(21634659-21634721)
chr8 (80-124)||(21607111-21607155)
[»] chr4 (3 HSPs)
chr4 (210-282)||(17970415-17970487)
chr4 (227-282)||(27444763-27444818)
chr4 (227-279)||(27431117-27431169)
[»] chr2 (1 HSPs)
chr2 (210-282)||(3073685-3073757)


Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 55085166 - 55084902
Alignment:
Q  18 cattgacatgttgaatatatcgtcattttgattagaaaaaataacaacaaatgatttgtttgtgaatttgtcattcagatagacaattctaacccttccc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55085166 cattgacatgttgaatatatcgtcattttgattagaaaaaataacaacaaatgatttgtttgtgaatttgtcattcagatagacaattctaacccttccc 55085067  T
Q  118 aaaggtagggataagnnnnnnnttacaattccatgaccgactattgtacaaaatgtcctagctaatctatgtcaatctctttcagtgtaagatttatagt 217  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55085066 aaaggtagggataagaaaaaaattacaattccatgaccgactattgtacaaaatgtcctagctaatctatgtcaatctctttcagtgtaagatttatagt 55084967  T
Q  218 tcattgaagcgagaagtaatatgaaagaaaacatcttctgcgcaaggaattgtgaggccacccat 282  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  55084966 tcattgaagcgagaagtaatatgaaagaaaacatcttctgtgcaaggaattgtgaggccacccat 55084902  T

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Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 156 - 282
Target Start/End: Original strand, 38028664 - 38028790
Alignment:
Q  156 gactattgtacaaaatgtcctagctaatctatgtcaatctctttcagtgtaagatttatagttcattgaagcgagaagtaatatgaaagaaaacatcttc 255  Q
    |||||||||||||||| | || |||||||||||||| |||| || ||||||||||||||||  |||||||| ||||||||||||| |||||||| |||||    
T  38028664 gactattgtacaaaattttcttgctaatctatgtcagtctcctttagtgtaagatttatagcccattgaagtgagaagtaatatgcaagaaaacgtcttc 38028763  T
Q  256 tgcgcaaggaattgtgaggccacccat 282  Q
    || |||||||||||||||||| |||||    
T  38028764 tgtgcaaggaattgtgaggccgcccat 38028790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 156 - 282
Target Start/End: Original strand, 38039979 - 38040105
Alignment:
Q  156 gactattgtacaaaatgtcctagctaatctatgtcaatctctttcagtgtaagatttatagttcattgaagcgagaagtaatatgaaagaaaacatcttc 255  Q
    |||||||||||||||| | || |||||||||||||| |||| || ||||||||||||||||  |||||||| ||||||||||||| |||||||| |||||    
T  38039979 gactattgtacaaaattttcttgctaatctatgtcagtctcctttagtgtaagatttatagcccattgaagtgagaagtaatatgcaagaaaacgtcttc 38040078  T
Q  256 tgcgcaaggaattgtgaggccacccat 282  Q
    || |||||||||||||||||| |||||    
T  38040079 tgtgcaaggaattgtgaggccgcccat 38040105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 156 - 282
Target Start/End: Complemental strand, 50910202 - 50910076
Alignment:
Q  156 gactattgtacaaaatgtcctagctaatctatgtcaatctctttcagtgtaagatttatagttcattgaagcgagaagtaatatgaaagaaaacatcttc 255  Q
    |||||||||||||||| |||  |||||||||||||| |||| || | || ||||||||||| |||||||||||||||||||| || ||||| ||||||||    
T  50910202 gactattgtacaaaatttccctgctaatctatgtcagtctcctttattgaaagatttatagctcattgaagcgagaagtaatttgcaagaagacatcttc 50910103  T
Q  256 tgcgcaaggaattgtgaggccacccat 282  Q
    || ||||||||||||||||||||||||    
T  50910102 tgtgcaaggaattgtgaggccacccat 50910076  T

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Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 178 - 282
Target Start/End: Original strand, 38033695 - 38033799
Alignment:
Q  178 gctaatctatgtcaatctctttcagtgtaagatttatagttcattgaagcgagaagtaatatgaaagaaaacatcttctgcgcaaggaattgtgaggcca 277  Q
    |||||||||||||| |||| || ||||||||||||||||  |||||||||||||||||||||| |||||||||||||||| ||| |||||||||| |||     
T  38033695 gctaatctatgtcagtctcctttagtgtaagatttatagcccattgaagcgagaagtaatatgcaagaaaacatcttctgtgcagggaattgtgatgccg 38033794  T
Q  278 cccat 282  Q
    |||||    
T  38033795 cccat 38033799  T

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Target: chr3; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 157 - 282
Target Start/End: Original strand, 38036692 - 38036817
Alignment:
Q  157 actattgtacaaaatgtcctagctaatctatgtcaatctctttcagtgtaagatttatagttcattgaagcgagaagtaatatgaaagaaaacatcttct 256  Q
    ||||||||||||||| | ||  ||||||||||||| |||| |  ||||||||||||||||  |||||||| ||||||||||||| |||||||| | ||||    
T  38036692 actattgtacaaaattttctttctaatctatgtcagtctcctatagtgtaagatttatagcccattgaagtgagaagtaatatgcaagaaaacgtattct 38036791  T
Q  257 gcgcaaggaattgtgaggccacccat 282  Q
    | |||||||||||||||||| |||||    
T  38036792 gtgcaaggaattgtgaggccgcccat 38036817  T

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Target: chr3; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 164 - 282
Target Start/End: Original strand, 38024781 - 38024899
Alignment:
Q  164 tacaaaatgtcctagctaatctatgtcaatctctttcagtgtaagatttatagttcattgaagcgagaagtaatatgaaagaaaacatcttctgcgcaag 263  Q
    |||||| ||||||||||||||||||||| |||  || ||||||||||||||||  ||||||||||||||||||| |  | |||||  ||||||| |||||    
T  38024781 tacaaagtgtcctagctaatctatgtcagtcttctttagtgtaagatttatagcccattgaagcgagaagtaatttccatgaaaatgtcttctgtgcaag 38024880  T
Q  264 gaattgtgaggccacccat 282  Q
    |||| ||||||||||||||    
T  38024881 gaatcgtgaggccacccat 38024899  T

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Target: chr3; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 164 - 282
Target Start/End: Original strand, 38031233 - 38031351
Alignment:
Q  164 tacaaaatgtcctagctaatctatgtcaatctctttcagtgtaagatttatagttcattgaagcgagaagtaatatgaaagaaaacatcttctgcgcaag 263  Q
    |||||| ||||||||||||||||||||| |||  || ||||||||||||||||  ||||||||||||||||||| |  | |||||  ||||||| |||||    
T  38031233 tacaaagtgtcctagctaatctatgtcagtcttctttagtgtaagatttatagcccattgaagcgagaagtaatttccatgaaaatgtcttctgtgcaag 38031332  T
Q  264 gaattgtgaggccacccat 282  Q
    |||| ||||||||||||||    
T  38031333 gaatcgtgaggccacccat 38031351  T

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Target: chr3; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 179 - 282
Target Start/End: Original strand, 48840633 - 48840736
Alignment:
Q  179 ctaatctatgtcaatctctttcagtgtaagatttatagttcattgaagcgagaagtaatatgaaagaaaacatcttctgcgcaaggaattgtgaggccac 278  Q
    ||||||||||||| | |||| |||| | ||||||||||  ||||||||| |  |||||| || |||||||||||||||| ||||||||||||||||||||    
T  48840633 ctaatctatgtcagtatcttccagttttagatttatagcccattgaagctaacagtaatgtgcaagaaaacatcttctgtgcaaggaattgtgaggccac 48840732  T
Q  279 ccat 282  Q
    ||||    
T  48840733 ccat 48840736  T

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Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 158 - 282
Target Start/End: Original strand, 50904692 - 50904816
Alignment:
Q  158 ctattgtacaaaatgtc-ctagctaatctatgtcaatctctttcagtgtaagatttatagttcattgaagcgagaagtaatatgaaagaaaacatcttct 256  Q
    ||||||| ||||||||| ||| ||||||||||||| |||||| |||    ||||||| ||  |||||||||||||||| ||||| || ||||| ||||||    
T  50904692 ctattgttcaaaatgtcacta-ctaatctatgtcactctcttgcagctgcagatttacagcccattgaagcgagaagtgatatgcaaaaaaacctcttct 50904790  T
Q  257 gcgcaaggaattgtgaggccacccat 282  Q
      ||||||||| ||||||||||||||    
T  50904791 ctgcaaggaatggtgaggccacccat 50904816  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 282
Target Start/End: Complemental strand, 38044082 - 38044019
Alignment:
Q  219 cattgaagcgagaagtaatatgaaagaaaacatcttctgcgcaaggaattgtgaggccacccat 282  Q
    |||||||||||||||||| | | ||||||||| |||| | |||||||||||||||||| |||||    
T  38044082 cattgaagcgagaagtaacacgcaagaaaacaccttcggtgcaaggaattgtgaggccgcccat 38044019  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 38036610 - 38036656
Alignment:
Q  80 tgaatttgtcattcagatagacaattctaacccttcccaaaggtagg 126  Q
    |||||||||||||||||| |||||||||||| | | |||||||||||    
T  38036610 tgaatttgtcattcagatggacaattctaacacattccaaaggtagg 38036656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 38031142 - 38031186
Alignment:
Q  80 tgaatttgtcattcagatagacaattctaacccttcccaaaggta 124  Q
    |||||||||||||||||| |||||| ||||||| | |||||||||    
T  38031142 tgaatttgtcattcagatggacaatgctaacccattccaaaggta 38031186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 50911853 - 50911893
Alignment:
Q  242 aagaaaacatcttctgcgcaaggaattgtgaggccacccat 282  Q
    ||||||||| |||||| |||||||||||| |||||||||||    
T  50911853 aagaaaacaccttctgtgcaaggaattgttaggccacccat 50911893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 156 - 282
Target Start/End: Original strand, 21604652 - 21604778
Alignment:
Q  156 gactattgtacaaaatgtcctagctaatctatgtcaatctctttcagtgtaagatttatagttcattgaagcgagaagtaatatgaaagaaaacatcttc 255  Q
    |||||||||||||||| | || |||||||||||||| |||| || ||||||||||||||||  |||||||| ||||||||||||| |||||||| |||||    
T  21604652 gactattgtacaaaattttcttgctaatctatgtcagtctcctttagtgtaagatttatagcccattgaagtgagaagtaatatgcaagaaaacgtcttc 21604751  T
Q  256 tgcgcaaggaattgtgaggccacccat 282  Q
    || |||||||||||||||||| |||||    
T  21604752 tgtgcaaggaattgtgaggccgcccat 21604778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 164 - 282
Target Start/End: Original strand, 21607202 - 21607320
Alignment:
Q  164 tacaaaatgtcctagctaatctatgtcaatctctttcagtgtaagatttatagttcattgaagcgagaagtaatatgaaagaaaacatcttctgcgcaag 263  Q
    |||||| ||||||||||||||||||||| |||  || ||||||||||||||||  ||||||||||||||||||| |  | ||||| |||||||| |||||    
T  21607202 tacaaagtgtcctagctaatctatgtcagtcttctttagtgtaagatttatagcccattgaagcgagaagtaatttccatgaaaatatcttctgtgcaag 21607301  T
Q  264 gaattgtgaggccacccat 282  Q
    |||  ||||||||||||||    
T  21607302 gaaccgtgaggccacccat 21607320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 156 - 257
Target Start/End: Original strand, 21609702 - 21609803
Alignment:
Q  156 gactattgtacaaaatgtcctagctaatctatgtcaatctctttcagtgtaagatttatagttcattgaagcgagaagtaatatgaaagaaaacatcttc 255  Q
    |||||||||||||||| | || |||||||||||||| |||| || ||||||||||||||||  |||||||| ||||||||||||| |||||||  |||||    
T  21609702 gactattgtacaaaattttcttgctaatctatgtcagtctcctttagtgtaagatttatagcccattgaagtgagaagtaatatgcaagaaaatgtcttc 21609801  T
Q  256 tg 257  Q
    ||    
T  21609802 tg 21609803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 282
Target Start/End: Complemental strand, 21634721 - 21634659
Alignment:
Q  220 attgaagcgagaagtaatatgaaagaaaacatcttctgcgcaaggaattgtgaggccacccat 282  Q
    |||||| |||||||||| | | |||||||||||||| | |||||||||||||| ||| |||||    
T  21634721 attgaatcgagaagtaacacgcaagaaaacatcttcggtgcaaggaattgtgaagccgcccat 21634659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 21607111 - 21607155
Alignment:
Q  80 tgaatttgtcattcagatagacaattctaacccttcccaaaggta 124  Q
    |||||||||||||||||| |||||| ||||||| | |||||||||    
T  21607111 tgaatttgtcattcagatggacaatgctaacccattccaaaggta 21607155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 282
Target Start/End: Complemental strand, 17970487 - 17970415
Alignment:
Q  210 tttatagttcattgaagcgagaagtaatatgaaagaaaacatcttctgcgcaaggaattgtgaggccacccat 282  Q
    |||||||  ||||||||| |||||||| ||| || ||||||||||||| ||||||||||||||||||||||||    
T  17970487 tttatagaccattgaagctagaagtaacatgcaaaaaaacatcttctgtgcaaggaattgtgaggccacccat 17970415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 227 - 282
Target Start/End: Original strand, 27444763 - 27444818
Alignment:
Q  227 cgagaagtaatatgaaagaaaacatcttctgcgcaaggaattgtgaggccacccat 282  Q
    |||||||||||||  |||||||| ||||||  ||||||||||||||| ||||||||    
T  27444763 cgagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccat 27444818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 27431117 - 27431169
Alignment:
Q  227 cgagaagtaatatgaaagaaaacatcttctgcgcaaggaattgtgaggccacc 279  Q
    |||||||||||||  |||||||| ||||||  ||||||||||||||| |||||    
T  27431117 cgagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacc 27431169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 210 - 282
Target Start/End: Complemental strand, 3073757 - 3073685
Alignment:
Q  210 tttatagttcattgaagcgagaagtaatatgaaagaaaacatcttctgcgcaaggaattgtgaggccacccat 282  Q
    |||||||  ||||||||| |||||||| ||| || ||||||||||||| ||||||||||||||||||||||||    
T  3073757 tttatagaccattgaagctagaagtaacatgcaaaaaaacatcttctgtgcaaggaattgtgaggccacccat 3073685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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