View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7709_low_21 (Length: 266)
Name: NF7709_low_21
Description: NF7709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7709_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 21 - 260
Target Start/End: Original strand, 7493036 - 7493275
Alignment:
| Q |
21 |
cattcctctctaaattttgaagtacgaccctactcaaaatgaatggtatcgtaaagctccaatataatattttgaatcagaatgctttgtttgtgtaaaa |
120 |
Q |
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| T |
7493036 |
cattcctctctaaattttgaagtacgaccctactcaaaatgaatggtatcgtaaagctccaatataatattttgaatcagaatgctttgtttgtgtaaaa |
7493135 |
T |
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| Q |
121 |
agaagtggaaagttgatgcaacgatagatctgaataacataattcctttcggtacataccacatttatgaattcatcaaaaagttctgagctgatctgca |
220 |
Q |
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| T |
7493136 |
agaagtggaaagttgatgtaacgatagatctgaataacataattcctttcggtacataccacatttatgaattcatcaaaaagttctgagctgatctgca |
7493235 |
T |
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| Q |
221 |
aatgaaataatcttgctgctaagtctaattcctggttctt |
260 |
Q |
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| T |
7493236 |
aatgaaataatcttgctgctaagtctaattcctggttctt |
7493275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 7476343 - 7476585
Alignment:
| Q |
18 |
tatcattcctctctaaattttgaagtacgaccctactcaaaatgaatggtatcgtaaagctccaatataatattttgaatcagaatgctttgtttgtgta |
117 |
Q |
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| T |
7476343 |
tatcattcctctctaaattttgaagtatgaccctactcaaaatgaatggtatcgtaaagctccaatataatattttgaatcagaatgctttgtttgtgta |
7476442 |
T |
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| Q |
118 |
aaaagaagtggaaagttgatgcaacgatagatctgaataacataattcctttcggtacataccacatttatgaattcatcaaaaagttctgagctgatct |
217 |
Q |
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| T |
7476443 |
aaaagaagtggaaagttgatgcaaagatagatctgaataacataattcctttcggtacataccatatttatgaattcatcaaaaagttctgagctgatct |
7476542 |
T |
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| Q |
218 |
gcaaatgaaataatcttgctgctaagtctaattcctggttctt |
260 |
Q |
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| T |
7476543 |
gctaatgaaataatcttgctgctaagtctaattcctggttctt |
7476585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 180 - 260
Target Start/End: Complemental strand, 46522611 - 46522531
Alignment:
| Q |
180 |
cacatttatgaattcatcaaaaagttctgagctgatctgcaaatgaaataatcttgctgctaagtctaattcctggttctt |
260 |
Q |
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| T |
46522611 |
cacatttatgaattcatcaagaagttctgagcttatctacaaatgaaataatcttgctgctatgtctatttcccggttctt |
46522531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 180 - 260
Target Start/End: Complemental strand, 46530044 - 46529964
Alignment:
| Q |
180 |
cacatttatgaattcatcaaaaagttctgagctgatctgcaaatgaaataatcttgctgctaagtctaattcctggttctt |
260 |
Q |
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| T |
46530044 |
cacatttatgaattcatcaagaagttctgagcttatctacaaatgaaataatcttgctgctatgtctatttccgggttctt |
46529964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 58 - 164
Target Start/End: Complemental strand, 46523535 - 46523429
Alignment:
| Q |
58 |
aatgaatggtatcgtaaagctccaatataatattttgaatcagaatgctttgtttgtgtaaaaagaagtggaaagttgatgcaacgatagatctgaataa |
157 |
Q |
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||||||| || |||| ||||||||||||||| ||||||| || | | |||||||||| ||||| |||||||||||||| || || ||||||||||||||| |
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| T |
46523535 |
aatgaatcgtctcgtgaagctccaatataatgttttgaaacaaagttctttgtttgtctaaaatgaagtggaaagttgctgtaatgatagatctgaataa |
46523436 |
T |
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| Q |
158 |
cataatt |
164 |
Q |
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||||||| |
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| T |
46523435 |
cataatt |
46523429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 46519269 - 46519220
Alignment:
| Q |
180 |
cacatttatgaattcatcaaaaagttctgagctgatctgcaaatgaaata |
229 |
Q |
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|||||||| ||||||||||| || |||||||||||||||||||||||||| |
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| T |
46519269 |
cacatttacgaattcatcaagaaattctgagctgatctgcaaatgaaata |
46519220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 46531084 - 46531028
Alignment:
| Q |
40 |
aagtacgaccctactcaaaatgaatggtatcgtaaagctccaatataatattttgaa |
96 |
Q |
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| T |
46531084 |
aagtatgaccctactcagattgaatcgtatcgtgaagctacaatataatattttgaa |
46531028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 46324378 - 46324445
Alignment:
| Q |
180 |
cacatttatgaattcatcaaaaagttctgagctgatctgcaaatgaaataatcttgctgctaagtcta |
247 |
Q |
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|||||||||||||||||||| |||||||||||||| ||| ||||||||| ||| |||||||||| |
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| T |
46324378 |
cacatttatgaattcatcaagaagttctgagctgacctgatgatgaaataacgatgccgctaagtcta |
46324445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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