View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7709_low_23 (Length: 251)
Name: NF7709_low_23
Description: NF7709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7709_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 44014315 - 44014092
Alignment:
| Q |
1 |
catttctggtctcaccattgccagccttgccattcctcaggtataacacacactaacttcttacatatgtctctgatatacttgatattgaagacttgtt |
100 |
Q |
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| T |
44014315 |
catttctggtctcaccattgccagccttgccattcctcaggtataacacacactaacttcttacatatgtctccgatatacttgatattgaagacgtgt- |
44014217 |
T |
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| Q |
101 |
tggtgtcgagacatactatatttaattatttcattttgtgaaattaagacgtatctaatgtccactaatgtccaaaaatacgtggttacactcaattatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| |
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| T |
44014216 |
--gtgtcgagacatactatatttaattatttcattttgtgaaattaagacatat----------ctgatgtccaaaaatacgtggttacactcaattatt |
44014129 |
T |
|
| Q |
201 |
ttattttatgtaattaccattgatgttagtgtcgtgt |
237 |
Q |
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|||||||||| |||||||||||||||||||||||||| |
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| T |
44014128 |
ttattttatgaaattaccattgatgttagtgtcgtgt |
44014092 |
T |
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