View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7709_low_29 (Length: 207)
Name: NF7709_low_29
Description: NF7709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7709_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 4e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 20 - 188
Target Start/End: Original strand, 6089182 - 6089347
Alignment:
| Q |
20 |
ctcaccacaaacaccaagatttccaacatcacacatctcttccaacaattcttgagctggtttcaaaaacctagaatccttcaaaacagaagcatatcca |
119 |
Q |
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| T |
6089182 |
ctcaccacaaacaccaagatttccaacatcacacatctcttccaacaattcttgagctggtttcaaaaacctagaatccttcaaaacagaagcatatcca |
6089281 |
T |
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| Q |
120 |
gtaaatggaactgaaccaccacttcctcctcctccttcaaccaacccttgaatcacacctccaccacca |
188 |
Q |
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| T |
6089282 |
gtaaatggaactgaaccaccact---tcctcctccttcaaccaaaccttgaatcacacctccaccacca |
6089347 |
T |
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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 124
Target Start/End: Original strand, 23676727 - 23676809
Alignment:
| Q |
42 |
ccaacatcacacatctcttccaacaattcttgagctggtttcaaaaacctagaatccttcaaaacagaagcatatccagtaaa |
124 |
Q |
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| T |
23676727 |
ccaacatcacatatctcatccaataattgttgtgcaggtttcaaaaacctcgatcccttcaaaacagaagcataacccgtaaa |
23676809 |
T |
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