View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7709_low_6 (Length: 457)
Name: NF7709_low_6
Description: NF7709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7709_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 36467252 - 36467370
Alignment:
| Q |
1 |
aagaagaagaagagaaattatcagaacccttgatcttccgggaattacccatttcacgttcctcctttctgatccacgcacaaccatcatcatgtaaatg |
100 |
Q |
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| T |
36467252 |
aagaagaagaagagaaattatcagaacccttgatcttccgggaattacccatttcacgttcctcctttctgatccacgcacaaccatcatcatgtaaatg |
36467351 |
T |
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| Q |
101 |
tagacactgatagctcaag |
119 |
Q |
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| T |
36467352 |
tagacactgatagctcaag |
36467370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 36476894 - 36476986
Alignment:
| Q |
1 |
aagaagaagaagagaaattatcagaacccttgatcttccgggaattacccatttcacgttcctcctttctgatccacgcacaaccatcatcat |
93 |
Q |
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| T |
36476894 |
aagaagaagaaaacaaattaacagaaaccttgatcttccgagagttacccatttcatgtcccttctttttgatccatgcatagccatgatcat |
36476986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 256
Target Start/End: Original strand, 33811019 - 33811112
Alignment:
| Q |
163 |
tctattgtgacagtcaaagtgcaatagaccttagcaagaactctatgtaccatgcaaggaccaaacacattgatgtgagatatcattggattcg |
256 |
Q |
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| T |
33811019 |
tctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggtatcattggattcg |
33811112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 256
Target Start/End: Original strand, 33815937 - 33816030
Alignment:
| Q |
163 |
tctattgtgacagtcaaagtgcaatagaccttagcaagaactctatgtaccatgcaaggaccaaacacattgatgtgagatatcattggattcg |
256 |
Q |
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| T |
33815937 |
tctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggtatcattggattcg |
33816030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 163 - 253
Target Start/End: Complemental strand, 4836444 - 4836354
Alignment:
| Q |
163 |
tctattgtgacagtcaaagtgcaatagaccttagcaagaactctatgtaccatgcaaggaccaaacacattgatgtgagatatcattggat |
253 |
Q |
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| T |
4836444 |
tctattgtgatagtcaaagtgcaattcacctcagcaagaattcgacataccattcaaggtcaaaacacatcgatgtgaggtatcattggat |
4836354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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