View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7710_high_1 (Length: 1069)
Name: NF7710_high_1
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7710_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 445; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 14 - 552
Target Start/End: Original strand, 16686914 - 16687454
Alignment:
| Q |
14 |
cagaaaatacgaccggtttcgttagttatcaaaagactgtagtggccatggttcctgttgatgaacaaactttgcctggtcatgcaacaactaatgtgag |
113 |
Q |
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| T |
16686914 |
cagaaaatacgaccggtttcgttagttatcaaaagactgtagtggccatggttcctgttgatgcacaaactttgcctggtcatgcaacaactaatgtgag |
16687013 |
T |
|
| Q |
114 |
tgttactgctggtcttatgagtcacaaattgatgactaatgaaaattttgtggctgatgttggagatggatcttttaatatgacaacaaggacaacattt |
213 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
16687014 |
tgttactgcgggtcttatgagtcacaaattgatgactaatgaaaattttgtggctgatgttggagatggatcttttaatatgacaacaagaacaacattt |
16687113 |
T |
|
| Q |
214 |
catgggaaagtgcatttgctgaagattattaagataaaggcattggttaatatgtattgtgatatattgtttaaaatggatccaatggatgctgtttcta |
313 |
Q |
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| T |
16687114 |
catgggaaagtgcatttgctgaagattatcaagataaaggcattggttaatatgtattgtgatatattgtttaaaatggatccaatggatgctgtttcta |
16687213 |
T |
|
| Q |
314 |
gctgtgtaacccatatgagggttctgtaattggggc-annnnnnnngtag----ttgcgattgcaattttaataaaaatgcttctggttaagaaaaagaa |
408 |
Q |
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| T |
16687214 |
gctgtgtaacccatatgagggttctgtaattggggcttttttttttgtagttgcttgctattgcaattttaataaaaatgcttctggttaagaaaaaga- |
16687312 |
T |
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| Q |
409 |
ttattactcctgtttatggcttcagcatttcattgtatatattattgatacttcttctgatctttctattctaaatgtttgtaaccaaagttggagtact |
508 |
Q |
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| T |
16687313 |
--attactcctgtttatggcttcagcatttcattgtatatattattgatacttcttctgatctttctattctaaatgtttgtaaccaaagttggagtact |
16687410 |
T |
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| Q |
509 |
cgagttaaagatcacatgcgtctttcagacatcattgatgtgtt |
552 |
Q |
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| T |
16687411 |
cgagttaacgatcacatgtttctttcagacatcattgatgtgtt |
16687454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 564 - 1059
Target Start/End: Original strand, 16687639 - 16688134
Alignment:
| Q |
564 |
aggatataaaagtgcgacttaatgtcacactcaagctacgatgacaatttcacaacttttcgcacgctttcctcctcatttctcttcactcatttgagcg |
663 |
Q |
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| T |
16687639 |
aggatatagaagcgcgacttaacgtcacactcaagctacgatgacaatttcaccacttttcgcacactttcctcctcatttctcgtcactcatttgagcg |
16687738 |
T |
|
| Q |
664 |
ttagagtgctgacttgttttgcaagtctctttccgctcgccagagaattatctcatccgctccataatctttcctccctcgcacttgactctgatcaata |
763 |
Q |
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| T |
16687739 |
ttagagtgctaacttgttttgcaagtctctttccgctcgccagagaattatctcatccgctccataatctttcctccctcgcacttgactctgatcaata |
16687838 |
T |
|
| Q |
764 |
gcatgatcatattcgacaatgcatctctaccctggtctactccaaaacattggcactggaaggagggaaaacttcatcgtttccattggagtcctttgat |
863 |
Q |
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| T |
16687839 |
gcatgatcatattcgacaatgcatctctaccctggtctactccaaaacattggcactggaaggagggaaaacttcatcgtttccatcggagtcctttgat |
16687938 |
T |
|
| Q |
864 |
tcaaccactgtaaccgtttcagtgtttccataaccattttttgctacgctctctcattcaccttgtgctaagaaaaccactgatgaaagctacaacatag |
963 |
Q |
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| T |
16687939 |
tcaaccaccataaccgtttcggtgtttccataaccattttttgctacgctctctcgttcaccttgtgctaagaaaaccactgatgaaagctacaacatag |
16688038 |
T |
|
| Q |
964 |
tcgtggctcttcctttgggatccatactctttagagttaagctgacaccatcctctctcccgtcgcattctgcgacgtcaatgttgcttcatctca |
1059 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||| ||||| |
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| T |
16688039 |
tcgtggctcttcctttgggatccatactctttagagttaagctgacaccatcctctctcccgtcgcagaaggggacgtcgatgttgcttcttctca |
16688134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 88 - 228
Target Start/End: Original strand, 16619820 - 16619960
Alignment:
| Q |
88 |
cctggtcatgcaacaactaatgtgagtgttactgctggtcttatgagtcacaaattgatgactaatgaaaattttgtggctgatgttggagatggatctt |
187 |
Q |
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||||||||| |||||| |||||||||| |||||| |||||||||||| | ||||| ||||||| || ||| ||| ||||||| ||||||||||| |
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| T |
16619820 |
cctggtcatagaacaacaaatgtgagtgctactgcaggtcttatgagtgtagagttgatatctaatgataagtttttggtggatgttgcagatggatctt |
16619919 |
T |
|
| Q |
188 |
ttaatatgacaacaaggacaacatttcatgggaaagtgcat |
228 |
Q |
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| T |
16619920 |
ttaatttcacagcaaaggcaatatttcatgggaaagtgcat |
16619960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 228
Target Start/End: Original strand, 16644799 - 16644928
Alignment:
| Q |
99 |
aacaactaatgtgagtgttactgctggtcttatgagtcacaaattgatgactaatgaaaattttgtggctgatgttggagatggatcttttaatatgaca |
198 |
Q |
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|||||||||||||| || ||||||||||||||||| | | || ||||| ||||||| || ||| ||| ||||||| | |||||||||||||| | ||| |
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| T |
16644799 |
aacaactaatgtgactgctactgctggtcttatgaatgaaaagttgatatctaatgataagtttttggtggatgttgcacatggatcttttaatctaaca |
16644898 |
T |
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| Q |
199 |
acaaggacaacatttcatgggaaagtgcat |
228 |
Q |
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| T |
16644899 |
gcaaaggcaacacttcgtgggaaagtgcat |
16644928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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