View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7710_high_11 (Length: 417)

Name: NF7710_high_11
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7710_high_11
NF7710_high_11
[»] chr2 (4 HSPs)
chr2 (17-387)||(34250025-34250395)
chr2 (200-242)||(38724013-38724055)
chr2 (323-387)||(34236785-34236849)
chr2 (208-240)||(28224846-28224878)
[»] chr8 (4 HSPs)
chr8 (145-240)||(42659073-42659168)
chr8 (202-242)||(39434513-39434553)
chr8 (212-242)||(25326158-25326188)
chr8 (200-232)||(44337194-44337226)
[»] chr1 (3 HSPs)
chr1 (145-237)||(48841248-48841340)
chr1 (157-239)||(5453942-5454024)
chr1 (145-243)||(47459526-47459623)
[»] chr4 (10 HSPs)
chr4 (151-240)||(12917895-12917984)
chr4 (181-239)||(41372270-41372328)
chr4 (145-241)||(23255558-23255654)
chr4 (203-247)||(53619425-53619469)
chr4 (157-240)||(3329842-3329925)
chr4 (182-237)||(28977296-28977351)
chr4 (145-240)||(50001092-50001187)
chr4 (208-238)||(9657469-9657499)
chr4 (148-225)||(23604951-23605028)
chr4 (189-238)||(55933670-55933719)
[»] chr3 (4 HSPs)
chr3 (145-242)||(26772602-26772699)
chr3 (145-225)||(39583395-39583475)
chr3 (145-240)||(38671046-38671141)
chr3 (189-231)||(50657232-50657274)
[»] chr6 (5 HSPs)
chr6 (145-239)||(17249471-17249565)
chr6 (204-240)||(32531073-32531109)
chr6 (182-240)||(33220914-33220972)
chr6 (200-240)||(7749327-7749367)
chr6 (188-229)||(357925-357966)
[»] chr7 (6 HSPs)
chr7 (157-238)||(38766172-38766253)
chr7 (188-239)||(28517496-28517547)
chr7 (182-240)||(36931905-36931963)
chr7 (182-238)||(38832150-38832206)
chr7 (148-224)||(40726649-40726725)
chr7 (145-252)||(45003063-45003169)
[»] chr5 (6 HSPs)
chr5 (208-245)||(27336536-27336573)
chr5 (145-237)||(430451-430543)
chr5 (145-237)||(25663198-25663290)
chr5 (183-239)||(35310295-35310351)
chr5 (182-232)||(33692255-33692305)
chr5 (200-237)||(2917582-2917619)


Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 17 - 387
Target Start/End: Original strand, 34250025 - 34250395
Alignment:
Q  17 cacttagttcgagaggttattttctacagttgtgcgcataggatatatactgatccacaaaaaagaaaatgttagataatgtattattgtatgtctaatt 116  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34250025 cacttagttcgagaggttattttctacggttgtgcgcataggatatatactgatccacaaaaaagaaaatgttagataatgtactattgtatgtctaatt 34250124  T
Q  117 caaacaaaatatatgtctatatttaatatacgaggattaattttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||| ||||||||||||||||||||||||||||    
T  34250125 caaacaaaatatatgtctatatttaatatacgaggattaattttgtcatccaaaaagatctaatagcgcaatttgttgtcggtttgcctcatattcatgt 34250224  T
Q  217 gtaagtaatattgatagtaaatattaaatttaaaaagaaacataatatctaataaaccgaccggtggcctatataagtcattcattccacagttgaagtc 316  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34250225 gtaagtaatattgatattaaatattaaatttaaaaagaaacataatatctaataaaccgaccggtggcctatataagtcattcattccacagttgaagtc 34250324  T
Q  317 taacatatcttgcttacttacattcccttgttgactgcaagaatggaacttaagcacatactcattttcat 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34250325 taacatatcttgcttacttacattcccttgttgactgcaagaatggaacttaagcacatactcattttcat 34250395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 38724013 - 38724055
Alignment:
Q  200 ttgcctcatattcatgtgtaagtaatattgatagtaaatatta 242  Q
    ||||||| |||| ||||||||||||||||||||||||||||||    
T  38724013 ttgcctcctatttatgtgtaagtaatattgatagtaaatatta 38724055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 34236785 - 34236849
Alignment:
Q  323 atcttgcttacttacattcccttgttgactgcaagaatggaacttaagcacatactcattttcat 387  Q
    ||||||||||||||| |||| ||||||| ||||||||||| | || ||||| | |||||||||||    
T  34236785 atcttgcttacttactttcctttgttgattgcaagaatgggatttcagcaccttctcattttcat 34236849  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 28224878 - 28224846
Alignment:
Q  208 tattcatgtgtaagtaatattgatagtaaatat 240  Q
    ||||||| |||||||||||||||||||||||||    
T  28224878 tattcatttgtaagtaatattgatagtaaatat 28224846  T

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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 145 - 240
Target Start/End: Complemental strand, 42659168 - 42659073
Alignment:
Q  145 tacgaggattaattttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaatat 240  Q
    ||||||||||||||||||||| |||||| ||||||  |   ||||||||||| | ||||||| ||||| |||||||||||||||||||||||||||    
T  42659168 tacgaggattaattttgtcatccaaaaaggtctaacggtataacttgttgtccgcttgcctcctattcttgtgtaagtaatattgatagtaaatat 42659073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 39434553 - 39434513
Alignment:
Q  202 gcctcatattcatgtgtaagtaatattgatagtaaatatta 242  Q
    ||||| |||||||||||||||||||||||||||||||||||    
T  39434553 gcctcctattcatgtgtaagtaatattgatagtaaatatta 39434513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 242
Target Start/End: Complemental strand, 25326188 - 25326158
Alignment:
Q  212 catgtgtaagtaatattgatagtaaatatta 242  Q
    |||||||||||||||||||||||||||||||    
T  25326188 catgtgtaagtaatattgatagtaaatatta 25326158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 232
Target Start/End: Complemental strand, 44337226 - 44337194
Alignment:
Q  200 ttgcctcatattcatgtgtaagtaatattgata 232  Q
    ||||||| |||||||||||||||||||||||||    
T  44337226 ttgcctcctattcatgtgtaagtaatattgata 44337194  T

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Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 145 - 237
Target Start/End: Original strand, 48841248 - 48841340
Alignment:
Q  145 tacgaggattaattttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaa 237  Q
    |||||||||| ||||||  || |||||| |||||  |||||||||||||||| | || |||||||||||||||||||||||||| ||||||||    
T  48841248 tacgaggattgattttgcaatccaaaaaagtctagcagcgcaacttgttgtccgcttacctcatattcatgtgtaagtaatattaatagtaaa 48841340  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 157 - 239
Target Start/End: Complemental strand, 5454024 - 5453942
Alignment:
Q  157 ttttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaata 239  Q
    ||||||||| |||||| |||||   ||||| ||||||| | | ||||||| ||||||||||||||||||||||||||||||||    
T  5454024 ttttgtcatccaaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattcatgtgtaagtaatattgatagtaaata 5453942  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 243
Target Start/End: Complemental strand, 47459623 - 47459526
Alignment:
Q  145 tacgaggattaattttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaatattaa 243  Q
    |||||| ||| |||| | |||||||||| |||||   ||||| ||||||||| | ||| ||| |||||||||||||| ||||||||| |||||||||||    
T  47459623 tacgagaattgatttagccattcaaaaaggtctagc-gcgcagcttgttgtctgcttggctcctattcatgtgtaaggaatattgatcgtaaatattaa 47459526  T

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Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 151 - 240
Target Start/End: Complemental strand, 12917984 - 12917895
Alignment:
Q  151 gattaattttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaatat 240  Q
    |||| |||||||||| |||||| ||||||  || |||||| ||||| | ||||||| |||||||| ||||||||||||||||||||||||    
T  12917984 gattgattttgtcatccaaaaaggtctaacggcacaacttattgtctgcttgcctcttattcatgagtaagtaatattgatagtaaatat 12917895  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 41372270 - 41372328
Alignment:
Q  181 agcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaata 239  Q
    |||||||||||||||| | ||||||| |||||||||||||||||||||||||| |||||    
T  41372270 agcgcaacttgttgtctgcttgcctcctattcatgtgtaagtaatattgatagaaaata 41372328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 241
Target Start/End: Complemental strand, 23255654 - 23255558
Alignment:
Q  145 tacgaggattaattttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaatatt 241  Q
    |||||||||| |||||| ||| || ||| |||||   ||||| ||||||||| | || |||| ||||||| ||| ||||||||||||||||||||||    
T  23255654 tacgaggattgattttgccatccagaaaagtctagcggcgcagcttgttgtccgcttacctcctattcatatgtgagtaatattgatagtaaatatt 23255558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 53619469 - 53619425
Alignment:
Q  203 cctcatattcatgtgtaagtaatattgatagtaaatattaaattt 247  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||    
T  53619469 cctcctattcatgtgtaagtaatattgatagtaaatattatattt 53619425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 157 - 240
Target Start/End: Complemental strand, 3329925 - 3329842
Alignment:
Q  157 ttttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaatat 240  Q
    ||||| ||| |||||| |||||   ||||| ||||||| | | ||||||| |||||| ||||||||||||||||||||||||||    
T  3329925 ttttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattcacgtgtaagtaatattgatagtaaatat 3329842  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 237
Target Start/End: Original strand, 28977296 - 28977351
Alignment:
Q  182 gcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaa 237  Q
    |||||||||||| || ||||||||| |||||||| |||| ||||||||||||||||    
T  28977296 gcgcaacttgttatcagtttgcctcctattcatgcgtaattaatattgatagtaaa 28977351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 145 - 240
Target Start/End: Original strand, 50001092 - 50001187
Alignment:
Q  145 tacgaggattaattttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaatat 240  Q
    ||||| |||| |||||| ||| ||||||  ||||   ||||| ||||||| | | ||||||| ||||||||||||||||||||| |||||||||||    
T  50001092 tacgaagattgattttgccatccaaaaagatctagcggcgcagcttgttgcccgcttgcctcctattcatgtgtaagtaatattaatagtaaatat 50001187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 238
Target Start/End: Original strand, 9657469 - 9657499
Alignment:
Q  208 tattcatgtgtaagtaatattgatagtaaat 238  Q
    |||||||||||||||||||||||||||||||    
T  9657469 tattcatgtgtaagtaatattgatagtaaat 9657499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 225
Target Start/End: Complemental strand, 23605028 - 23604951
Alignment:
Q  148 gaggattaattttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaat 225  Q
    ||||||| |||||||||| |||||| |||||   ||||||||||||||| | ||| ||  ||||||||||||| ||||    
T  23605028 gaggattgattttgtcatccaaaaaggtctagcggcgcaacttgttgtccggttgtcttctattcatgtgtaaataat 23604951  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 55933670 - 55933719
Alignment:
Q  189 ttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaat 238  Q
    |||||||| | ||||||| |||||||||| |||||||||||||| |||||    
T  55933670 ttgttgtccgcttgcctcctattcatgtgcaagtaatattgatattaaat 55933719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 145 - 242
Target Start/End: Complemental strand, 26772699 - 26772602
Alignment:
Q  145 tacgaggattaattttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaatatta 242  Q
    |||||||||| |||||| ||| |||||| |||||   ||||| ||||||| | | ||||||| ||||||||||||||||||||||||| |||||||||    
T  26772699 tacgaggattgattttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattcatgtgtaagtaatattgataataaatatta 26772602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 225
Target Start/End: Original strand, 39583395 - 39583475
Alignment:
Q  145 tacgaggattaattttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaat 225  Q
    |||||||||| |||||| ||| |||||| |||||   ||||||||||||||| | |||| |  ||||||||||||||||||    
T  39583395 tacgaggattgattttgccatccaaaaaggtctagcggcgcaacttgttgtctgcttgctttctattcatgtgtaagtaat 39583475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 145 - 240
Target Start/End: Original strand, 38671046 - 38671141
Alignment:
Q  145 tacgaggattaattttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaatat 240  Q
    ||||||||||  ||||| |||  ||||| |||||   ||||| ||||||||| | || |||| |||| |||||||| |||||||||||||||||||    
T  38671046 tacgaggattggttttgccatctaaaaaagtctagcggcgcagcttgttgtccgcttacctcctatttatgtgtaaataatattgatagtaaatat 38671141  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 231
Target Start/End: Complemental strand, 50657274 - 50657232
Alignment:
Q  189 ttgttgtcggtttgcctcatattcatgtgtaagtaatattgat 231  Q
    |||||||| | ||| ||||||||||||||||||||||||||||    
T  50657274 ttgttgtcagcttgtctcatattcatgtgtaagtaatattgat 50657232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 145 - 239
Target Start/End: Original strand, 17249471 - 17249565
Alignment:
Q  145 tacgaggattaattttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaata 239  Q
    ||||||||||  ||||| ||| |||||| |||||   ||||| ||||||| | | ||||||| ||||||||| ||||||||||||||||||||||    
T  17249471 tacgaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcctcctattcatgtataagtaatattgatagtaaata 17249565  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 32531073 - 32531109
Alignment:
Q  204 ctcatattcatgtgtaagtaatattgatagtaaatat 240  Q
    |||||||||||||||||||||||||||||||||||||    
T  32531073 ctcatattcatgtgtaagtaatattgatagtaaatat 32531109  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 33220914 - 33220972
Alignment:
Q  182 gcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaatat 240  Q
    ||||| ||||||| | | ||||||| |||||||||||||||||||||||||||| ||||    
T  33220914 gcgcagcttgttggccgcttgcctcctattcatgtgtaagtaatattgatagtatatat 33220972  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 7749367 - 7749327
Alignment:
Q  200 ttgcctcatattcatgtgtaagtaatattgatagtaaatat 240  Q
    ||||||| ||||||||||||| |||||||||||||||||||    
T  7749367 ttgcctcctattcatgtgtaactaatattgatagtaaatat 7749327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 357925 - 357966
Alignment:
Q  188 cttgttgtcggtttgcctcatattcatgtgtaagtaatattg 229  Q
    ||||||||||||||| ||| ||||||| ||||||||||||||    
T  357925 cttgttgtcggtttgtctcctattcatatgtaagtaatattg 357966  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 38766253 - 38766172
Alignment:
Q  157 ttttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaat 238  Q
    ||||| ||| |||||| |||||   ||||| ||||||| | | ||||||| |||||||||||||||||||||||||||||||    
T  38766253 ttttgccatccaaaaaggtctagctgcgcagcttgttgcccgcttgcctcctattcatgtgtaagtaatattgatagtaaat 38766172  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 28517496 - 28517547
Alignment:
Q  188 cttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaata 239  Q
    ||||||| | || |||||| ||||||||||||||||||||||||||||||||    
T  28517496 cttgttgcccgtctgcctcctattcatgtgtaagtaatattgatagtaaata 28517547  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 36931905 - 36931963
Alignment:
Q  182 gcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaatat 240  Q
    ||||| |||||| || | ||||||| ||||||| |||||||||||||||||||||||||    
T  36931905 gcgcagcttgttatccgcttgcctcctattcatatgtaagtaatattgatagtaaatat 36931963  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 38832206 - 38832150
Alignment:
Q  182 gcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaat 238  Q
    ||||| ||||||| | | ||||||| ||||||| |||||||||||||||||||||||    
T  38832206 gcgcagcttgttgcccgcttgcctcctattcatatgtaagtaatattgatagtaaat 38832150  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 224
Target Start/End: Original strand, 40726649 - 40726725
Alignment:
Q  148 gaggattaattttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaa 224  Q
    ||||||| |||||| ||| |||||| |||||| | |||| ||||||| | | ||||||| |||||||||||||||||    
T  40726649 gaggattgattttgccatccaaaaatgtctaacatcgcagcttgttgcccgcttgcctcctattcatgtgtaagtaa 40726725  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 145 - 252
Target Start/End: Original strand, 45003063 - 45003169
Alignment:
Q  145 tacgaggattaattttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaatattaaa 244  Q
    ||||| |||| |||||| ||| |||||| |||||   ||||| ||| ||||| | ||||||| ||||||||||||||||||||  || |||||||||| |    
T  45003063 tacgaagattgattttgccatccaaaaaggtctagcggcgcagcttattgtccgcttgcctcctattcatgtgtaagtaatatcaat-gtaaatattata 45003161  T
Q  245 tttaaaaa 252  Q
    | ||||||    
T  45003162 tgtaaaaa 45003169  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 27336573 - 27336536
Alignment:
Q  208 tattcatgtgtaagtaatattgatagtaaatattaaat 245  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27336573 tattcatgtgtaagtaatattgatagtaaatattaaat 27336536  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 145 - 237
Target Start/End: Complemental strand, 430543 - 430451
Alignment:
Q  145 tacgaggattaattttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaa 237  Q
    |||||||||| ||| || ||| |||||| |||||   | ||| ||||| ||| | ||||||| |||||||||| |||||||||||||||||||    
T  430543 tacgaggattgattatgccatccaaaaaggtctatcggtgcagcttgtngtctgcttgcctcctattcatgtgcaagtaatattgatagtaaa 430451  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 237
Target Start/End: Original strand, 25663198 - 25663290
Alignment:
Q  145 tacgaggattaattttgtcattcaaaaacgtctaatagcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaa 237  Q
    ||||||||||   |||||||| |||||| ||||||   |||| |||||||   ||||||||| | || |||||||||||||||||||||||||    
T  25663198 tacgaggattggctttgtcatccaaaaaggtctaacgacgcagcttgttgctcgtttgcctcctttttatgtgtaagtaatattgatagtaaa 25663290  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 35310351 - 35310295
Alignment:
Q  183 cgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgatagtaaata 239  Q
    |||| ||||||| | | ||||||| ||||||||||||||||||||||||||| ||||    
T  35310351 cgcagcttgttgcccgcttgcctcctattcatgtgtaagtaatattgatagttaata 35310295  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 232
Target Start/End: Original strand, 33692255 - 33692305
Alignment:
Q  182 gcgcaacttgttgtcggtttgcctcatattcatgtgtaagtaatattgata 232  Q
    ||||| ||||||| | | ||||||| |||||||||||||||||||||||||    
T  33692255 gcgcagcttgttgcctgcttgcctcctattcatgtgtaagtaatattgata 33692305  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 2917582 - 2917619
Alignment:
Q  200 ttgcctcatattcatgtgtaagtaatattgatagtaaa 237  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  2917582 ttgcctcctattcatgtgtaggtaatattgatagtaaa 2917619  T

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