View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7710_high_14 (Length: 393)
Name: NF7710_high_14
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7710_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 16 - 377
Target Start/End: Original strand, 41466079 - 41466437
Alignment:
| Q |
16 |
catcaagaagaaaaattgatttgatactagttcccgtttcttgttacgatcatgtacctgctttgtaagggatttggatggactgtagtcactgttttga |
115 |
Q |
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| T |
41466079 |
catcaagaagaaaaattgatttgatactagttcccgtttcttgttacgatcatgtacctgctttgtaagggatttggatggaccgtagtcactgttttga |
41466178 |
T |
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| Q |
116 |
tgaacactattaatgtgaaccattggatatgttggattcataatcatggttgttgatttacttggtttacaaagataggnnnnnnnngtgcatgtgaaga |
215 |
Q |
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| T |
41466179 |
tgaacactattaatgtgaaccattggatatgttggattcataatcatggttgttgatttacttggtttacaaagataggaaaaaaaagtgcatgtgaaga |
41466278 |
T |
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| Q |
216 |
gttaactattgtgtgaaagatgagaatttgagtcactatgactgagtagtaatgaatcatgtttgtatagagcagcaactacttgtgttagactgagatt |
315 |
Q |
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| T |
41466279 |
gttaactattgtgtgaaagatgagaatttgagtcactatgactg---agtaatgaatcatgtttgtatagagcagcaactacttgtgttagactgagatt |
41466375 |
T |
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| Q |
316 |
gtgatgttatatatgcgttcattaaaatatattctgtatacattgttgtacaatgagaaagt |
377 |
Q |
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| T |
41466376 |
gtgatgttatatatgcgttcattaaaatatattctgtatacattgttgtacaatgagaaagt |
41466437 |
T |
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