View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7710_high_15 (Length: 381)

Name: NF7710_high_15
Description: NF7710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7710_high_15
NF7710_high_15
[»] chr8 (3 HSPs)
chr8 (178-259)||(44310985-44311066)
chr8 (279-350)||(44310871-44310942)
chr8 (19-75)||(44311174-44311230)


Alignment Details
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 178 - 259
Target Start/End: Complemental strand, 44311066 - 44310985
Alignment:
Q  178 aatcaatggtgacaaaagttgtttaaaagattagtgttaatggcaatgaatatgatttccctttaattcttgactgagtatt 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44311066 aatcaatggtgacaaaagttgtttaaaagattagtgttaatggcaatgaatatgatttccctttaattcttgactgagtatt 44310985  T

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Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 279 - 350
Target Start/End: Complemental strand, 44310942 - 44310871
Alignment:
Q  279 tgttccaactctgcatcacctgcacatctttgacaacaaaagttatggttcttatgccaacatattatttct 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44310942 tgttccaactctgcatcacctgcacatctttgacaacaaaagttatggttcttatgccaacatattatttct 44310871  T

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Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 44311230 - 44311174
Alignment:
Q  19 agatttacatcacaatatgttaattgaatgacaacttcctcaaaccagatgcatcta 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44311230 agatttacatcacaatatgttaattgaatgacaacttcctcaaaccagatgcatcta 44311174  T

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